PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10004846

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 251aa MW: 27943.1 Da PI: 6.142

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10004846	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.7	2.5e-45	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Pt+eelv++yL+k++eg+ e ++vi+ vdiy ++Pw+Lp+ ++++++++w++F++r++++a+g r+nr+t sgyWkatg++ v+s Lus10004846 6 PPGFRFFPTEEELVSFYLHKQLEGTIQEGlHQVIPVVDIYAIDPWHLPSvageRCRGDTEQWFYFTPRQEREARGGRPNRTTGSGYWKATGSTSYVYS 103 9*********************986651567***********546666666888********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++g+kkt+vfykg+ap g+kt+W m+eyr+ Lus10004846 104 SNNRVIGVKKTMVFYKGKAPAGRKTKWKMNEYRA 137 ******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-49	4	164	IPR003441	NAC domain
PROSITE profile	PS51005	49.016	5	165	IPR003441	NAC domain
Pfam	PF02365	2.2E-23	6	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MAGQFPPGFR FFPTEEELVS FYLHKQLEGT IQEGLHQVIP VVDIYAIDPW HLPSVAGERC 60 RGDTEQWFYF TPRQEREARG GRPNRTTGSG YWKATGSTSY VYSSNNRVIG VKKTMVFYKG 120 KAPAGRKTKW KMNEYRAIDG GLSESSSPPI PRLRYEFSLC RIYVVSGTFG AFDRRPLEAT 180 TSTSTGAQVP SDVPSSSAQV PAAVVERTNS SETSNSGGDH GFSQGARIAD MEIADYLDEQ 240 FIDWEQLDWP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-37	5	163	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-37	5	163	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-37	5	163	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-37	5	163	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	5e-37	5	163	20	166	NAC domain-containing protein 19
3swm_B	5e-37	5	163	20	166	NAC domain-containing protein 19
3swm_C	5e-37	5	163	20	166	NAC domain-containing protein 19
3swm_D	5e-37	5	163	20	166	NAC domain-containing protein 19
3swp_A	5e-37	5	163	20	166	NAC domain-containing protein 19
3swp_B	5e-37	5	163	20	166	NAC domain-containing protein 19
3swp_C	5e-37	5	163	20	166	NAC domain-containing protein 19
3swp_D	5e-37	5	163	20	166	NAC domain-containing protein 19
4dul_A	5e-37	5	163	17	163	NAC domain-containing protein 19
4dul_B	5e-37	5	163	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10004846

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629180.1	1e-111	NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-92	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2C9V1V9	1e-109	A0A2C9V1V9_MANES; Uncharacterized protein
STRING	Lus10004846	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-95	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Lus10004846

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]