PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004573
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 327aa    MW: 34735.7 Da    PI: 7.2569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004573genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.2e-104873127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 +kt+lC+ f++ GtC+y  +C+FaH++
  Lus10004573 48 FKTKLCCKFRA-GTCPYVTNCNFAHSM 73
                 69*********.*************95 PP
2zf-CCCH18.82.9e-06119144126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  yk + C+ f+    C+yGd+C+F H+
  Lus10004573 119 YKGRHCKKFYTEEGCPYGDSCTFLHD 144
                  78888********************7 PP
3zf-CCCH42.51.1e-13204229126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  Lus10004573 204 WKTRICNKWELTGYCPFGSKCHFAHG 229
                  8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.44E-84578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-144580IPR000571Zinc finger, CCCH-type
SMARTSM003560.00134773IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9154774IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-74872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-7117146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-9117146IPR000571Zinc finger, CCCH-type
SMARTSM003560.086118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098118146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-16199233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-10200234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544203231IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-9203230IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-11204229IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEDSSNVVHV IPNPVWATEE DYINNYESGE PPSKKAKGNS KSIGKMFFKT KLCCKFRAGT  60
CPYVTNCNFA HSMEELRRPP HNWQEIVAAS EGEDEVAARE EFQIPAVVGG FGAEAQRSYK  120
GRHCKKFYTE EGCPYGDSCT FLHDEQSKNR ESVAISLGPG GYCGGGGGGG GGNGGGAGSG  180
VVVVVGGGNN GGGGNGSNLK PSNWKTRICN KWELTGYCPF GSKCHFAHGS AELHRYGGGL  240
VDLEVKDSPS APSDSKAVGV MPSKSPMDVV GAAVTSVPHS DVYHHLGLPS QRSAATLTQR  300
PGQRAQKWKG PDKISRIYGD WIDDME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046355e-42AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01.
GenBankAP0046985e-42AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149645e-42AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126165e-42CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599513.11e-144zinc finger CCCH domain-containing protein 12-like
SwissprotQ84UQ31e-116C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2C9U3U41e-143A0A2C9U3U4_MANES; Uncharacterized protein
STRINGLus100045730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-115C3H family protein