PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004270
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 321aa    MW: 36183.7 Da    PI: 4.3613
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004270genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-18100153356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ eq++ Le+ Fe ++++  +++ +LAk lgL+ rqV +WFqNrR ++k
  Lus10004270 100 KKRRLSVEQVQFLEKSFEVDNKLEPDRKVQLAKDLGLQPRQVAIWFQNRRGRWK 153
                  56689************************************************9 PP
2HD-ZIP_I/II118.83e-3899194192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR....tktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrls eqv++LE+sFe ++kLep+rKv+la++Lglqprqva+WFqnrR R    +ktkqlEkdy++L++++d+l+++ + L ke+++L++e++
  Lus10004270  99 EKKRRLSVEQVQFLEKSFEVDNKLEPDRKVQLAKDLGLQPRQVAIWFQNRRGRwktrWKTKQLEKDYDTLQSSFDSLQADYAGLLKEKDQLKSEID 194
                  69*************************************************7611115789*******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.22E-1883155IPR009057Homeodomain-like
PROSITE profilePS5007117.24895155IPR001356Homeobox domain
SMARTSM003891.9E-1898159IPR001356Homeobox domain
CDDcd000861.73E-16100156No hitNo description
PfamPF000461.6E-15100153IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-18106154IPR009057Homeodomain-like
PRINTSPR000312.3E-5126135IPR000047Helix-turn-helix motif
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PRINTSPR000312.3E-5135151IPR000047Helix-turn-helix motif
PfamPF021836.3E-14159201IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSAMAYDVGG GGGTCVTNLP PALLRNNKRS HLSDSQPLDS FFLPGSSPSF LGPRSIVRFD  60
DASQVNGSTS SSSNKPFFCS FELDENGDDD LDEYFRQPEK KRRLSVEQVQ FLEKSFEVDN  120
KLEPDRKVQL AKDLGLQPRQ VAIWFQNRRG RWKTRWKTKQ LEKDYDTLQS SFDSLQADYA  180
GLLKEKDQLK SEIDLLTEKL QQKERAKAVS DMSQGQMEKP AQPCKQEDIS SARSDIFDSE  240
SPHYTDGVHS SLLEAGDSSY VFEPDQSSDL SSQDEEDNLS RNLLPAAASY VLFPKLEDED  300
DYSDPSASFE DNAFWSSWPY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321530.21e-133homeobox-leucine zipper protein HAT5
TrEMBLA9PHH01e-131A9PHH0_POPTR; HD-ZIP family protein
STRINGLus100042700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-36homeobox 1