PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004201
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 692aa    MW: 75184 Da    PI: 6.906
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004201genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093704071954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Lus10004201 370 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 407
                  664459******************************88 PP
2BELL122.61.7e-39233304172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqe+q+kkakL+s+l+eV++rY+qy++q+q+vi++Fe++ag+g+ak Yt+lAlk+iS++FrcL+dai++qi
  Lus10004201 233 ERQEIQMKKAKLISMLDEVEQRYRQYHHQMQAVIGAFEQAAGIGTAKTYTALALKTISKQFRCLRDAITGQI 304
                  79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-63151302IPR006563POX domain
PfamPF075266.9E-50158301IPR006563POX domain
PROSITE profilePS5007112.163348411IPR001356Homeobox domain
CDDcd000862.52E-12351412No hitNo description
SMARTSM003896.4E-9351415IPR001356Homeobox domain
SuperFamilySSF466894.28E-17352418IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-29354417IPR009057Homeodomain-like
PfamPF059202.9E-18368407IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MATYFHGNPD IQSATAAVDG LQTLVLMNPS YVQYSDTPPP QQPPPPQFVG IPLDHHHQHH  60
HELSSPPAMH HRQLHQYNLY SSAIDPTEAT ARETPRAHQQ GLSLTLSAAA AAAGGGYGSG  120
MSEEHCVRVS VGSGSSSVTV ANNGGGGSGV HNGMQLGVLV SSKYLKAAQE LLDEVVNVNS  180
NGNNGAASKN GESGSRKAIN DNNNSAVGGE SSVAGDGKVD EGAQPAPELS TAERQEIQMK  240
KAKLISMLDE VEQRYRQYHH QMQAVIGAFE QAAGIGTAKT YTALALKTIS KQFRCLRDAI  300
TGQIKAANKS LGEEESPGGG KIEGSRLKFV DHHLRQQRAL QQLGMIQHNA WRPQRGLPER  360
SVSILRAWLF EHFLHPYPKD SDKHMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYTEE  420
MKDQEQTNNN GVSGDKIVSN KSDQNEESSS QSVPFHHDKN LGSSSFRSSM DNNNNNSPNQ  480
NVPSGISIST FPPSIGSLRN HSAFSITASS ELEGITQGSP KKPRNNSHNN HIDMLQLPSP  540
TSIQSNNNNN NNNDHHDLIK FVDERQGRDA GYSFMGVHNN FMQGAFGQYP IAEIGRFDPD  600
QFTQRFSSGN GVNLSLGLPH CDNLNLSASA THHSFLPNQS IQLGMRRNDQ MGEADEFGAI  660
ASSAAPTTYE SINNIQNRKG FAAPLLPDFV T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16357415563Homeobox protein Meis2
3k2a_B3e-16357415563Homeobox protein Meis2
4xrs_A3e-16357414158Homeobox protein Meis1
4xrs_B3e-16357414158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004201
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046419.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011046420.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011046421.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011046422.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011046423.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-169BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2N9GIG50.0A0A2N9GIG5_FAGSY; Uncharacterized protein
STRINGLus100042010.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-115BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]