PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004042
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 343aa    MW: 38189.7 Da    PI: 4.4487
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004042genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.66.1e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed +l++ +  +G  +W+++++  g+ R++k+c++rw +yl
      Lus10004042 14 KGPWTGDEDRKLANFILTHGQFCWRSVPKLSGLLRCGKSCRLRWINYL 61
                     79******************99**********99************97 PP
2Myb_DNA-binding52.98.4e-1770111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++ E++l +d+++qlG++ W++Ia++m+ gRt++++k+ w+++
      Lus10004042  70 LSESEEKLVIDLHAQLGNR-WSKIASHMP-GRTDNEIKNQWNTH 111
                      5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-19563IPR009057Homeodomain-like
PROSITE profilePS5129412.388961IPR017930Myb domain
SuperFamilySSF466891.09E-2511108IPR009057Homeodomain-like
SMARTSM007178.2E-111363IPR001005SANT/Myb domain
PfamPF002491.9E-111461IPR001005SANT/Myb domain
CDDcd001671.25E-71661No hitNo description
PROSITE profilePS5129424.76862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2464116IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1470111IPR001005SANT/Myb domain
CDDcd001674.01E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTGD EDRKLANFIL THGQFCWRSV PKLSGLLRCG KSCRLRWINY  60
LRPDLKRGLL SESEEKLVID LHAQLGNRWS KIASHMPGRT DNEIKNQWNT HIKKKLREMG  120
IDPLTHQPLL PPPPPHEQES CSKDISTIEQ DPVLMNINVP LDSATEATSS ISSSSSSTIL  180
DNGLQLAITQ VANQLDVTDY HNVEQVLTYD DGFCLEDVLL VEPPEIITND CGNNNNIDIN  240
LEFSPPANLS SSSSKGTNNL ADDSANTNGG NDNTTLEAAE HERWWAPKLP TKEDQLMGLW  300
ADDDLGCWDL EVNDEFNCEI EMIAASLRSC LDDDDYSSRT CK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004042
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001567.12e-91PREDICTED: protein ODORANT1-like
SwissprotQ50EX62e-76ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0E4B7Y22e-89A0A0E4B7Y2_POPNI; MYB transcriptional factor
TrEMBLU5FLU92e-89U5FLU9_POPTR; MYB family protein
STRINGLus100040420.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.15e-80myb domain protein 20
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]