PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10004035

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Nin-like

Protein Properties

Length: 398aa MW: 45289.4 Da PI: 4.685

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10004035	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.9	4.1e-23	305	354	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++dl++yF+ pi++A+ L++c TvLKr+CRq G++RWPhRk+ksl Lus10004035 305 AKLKVKDLAEYFDYPIQKASVMLNLCSTVLKRKCRQEGVRRWPHRKVKSL 354 7899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.688	285	374	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-18	307	354	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MDSNQIVPTQ GENPHELDTD AIERFLKSPD RIYPTVNNSG LEIELASDPT QTSVVDVPDP 60 DDPMTWNIDF CLEFADQIIP CQGTTTMGVG QSGSVSDSGD QCKENAPAGL GSSSDYETQR 120 QYYYYYEDTS IPEGEMETGQ VPTVSVNANM LNAALPRPFN CSSCQVLREI VHSDGGRITT 180 KLEIHGSVGM IFHAVLESHQ YFTDRPLESY FQTFDFTSKS LEEVKHLTKE YCIGRERDGF 240 FMEQDNYSKF YEALCVGYDW NDILEVHSPT GSAEEQQPQQ QPLQEETEGE KQDRSHLSIQ 300 RERAAKLKVK DLAEYFDYPI QKASVMLNLC STVLKRKCRQ EGVRRWPHRK VKSLKKQMEK 360 VRKFMHSNNH SVEEYARLQG SLENLQQQLD VIVTRGY*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MDSNQIVPTQ GENPHELDTD AIERFLKSPD RIYPTVNNSG LEIELASDPT QTSVVDVPDP  60
DDPMTWNIDF CLEFADQIIP CQGTTTMGVG QSGSVSDSGD QCKENAPAGL GSSSDYETQR  120
QYYYYYEDTS IPEGEMETGQ VPTVSVNANM LNAALPRPFN CSSCQVLREI VHSDGGRITT  180
KLEIHGSVGM IFHAVLESHQ YFTDRPLESY FQTFDFTSKS LEEVKHLTKE YCIGRERDGF  240
FMEQDNYSKF YEALCVGYDW NDILEVHSPT GSAEEQQPQQ QPLQEETEGE KQDRSHLSIQ  300
RERAAKLKVK DLAEYFDYPI QKASVMLNLC STVLKRKCRQ EGVRRWPHRK VKSLKKQMEK  360
VRKFMHSNNH SVEEYARLQG SLENLQQQLD VIVTRGY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10004035

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10004035	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	6e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Lus10004035