PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003894
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 322aa    MW: 36303.4 Da    PI: 4.8402
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003894genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY795.1e-25135195259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgy+ rKYGqK++ g+++prsYY Ct++   +C++ k+v+rs+edp+++e+tY+g+H+++
  Lus10003894 135 DDGYSGRKYGQKDMLGAKYPRSYYWCTYRstqNCWAVKQVQRSDEDPTIFEVTYRGTHTCS 195
                  8**************************99899***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.623129192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-22131195IPR003657WRKY domain
SuperFamilySSF1182901.19E-20133196IPR003657WRKY domain
SMARTSM007742.9E-30134196IPR003657WRKY domain
PfamPF031061.9E-21135194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEGRWTCEQR AALVNELIQG IQFAKQLRFH LKEESSAVDV AVGLVERILS SYDKALLILN  60
WSTGPMGQQP LQAATSSGVP GSPLSWNGSP PWSEVFEGTK DNRVPDYASK KRKTVARWTD  120
HVRISSENGL ESCIDDGYSG RKYGQKDMLG AKYPRSYYWC TYRSTQNCWA VKQVQRSDED  180
PTIFEVTYRG THTCSYGQQT EKQEQKQSID CSSSNQQLIP QDDLQKVMEN TEMIPFTFPT  240
TYQLQKNSFL SPATPPEPSY RPVSRLGETQ TSLQPLNLDF ADIISAHTSV SSTNSPILDL  300
DFQLDSFELV PNFSYDPEFF P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-15134194868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003894
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022522.11e-105PREDICTED: probable WRKY transcription factor 41
TrEMBLC9DI101e-103C9DI10_9ROSI; WRKY transcription factor 21
STRINGLus100038940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.19e-62WRKY family protein