PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003846
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 705aa    MW: 78093.4 Da    PI: 8.0364
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003846genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.8e-08148168425
                  ---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                  +lC+ f + G C++G++C+F+H
  Lus10003846 148 PLCKEFVA-GRCRRGSQCQFIH 168
                  79******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.001144170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976144171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5147169IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-5148168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5149170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601237264IPR000571Zinc finger, CCCH-type
SMARTSM003560.011239263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5239262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001241263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MSGGSRKRSS KWDLKEESRA SYESQQNYSS RSGKADSSYH KTDGGDRSRW SNSEHRRASR  60
ADGLIGDEYG RTSKPMAWER DDNYGPRLSP GLDERRHRSR RPSPVKEWTR PRRSGSNSRS  120
RSRSPVHSIR RDSGTSERSR SRSSVTAPLC KEFVAGRCRR GSQCQFIHQS AQLYEESWDG  180
RKKTVSSRHY ASNDSEEHPS GNGQNVDGRY LRHSSSDASG KGSKDDIGRG RDLDRRQVTD  240
KPCKFFASAN CRNGNRCRYS HQVEAEVSPE RMPRDDEKRL VDQDMDDREK TWDGPLWSDV  300
DNYSTAAKSG RDGENPLNDG EYNKPNDLSD AGPTVEPWSV DSSRVQRLDG RAALDHQAPA  360
NLVESDRSET LKVKEDQSIQ NDWEGDMEMS PEWNHGPANN LDSIAMEVPV LGDDATVAVQ  420
QSTHERPAIH SVYYSRKLGA REAKGLGINR SGTASNANRD GASPNALPIL SSTNSVEQTQ  480
MGTLPDHSRG ELAINPLNVD SGIPSSQNVV SDEQLSKLTD LSASLAQLLG QGQQLPQLYA  540
SHSSDHSNCD GEKDSADGGV QVAASNRSHE KVLQGTEEVP ESDNPKPIAE SGSKAKESKA  600
REEKTDDEKG KGLRAFKFAL VEFVKEALKP AWKEGQVSRD SYKNIVKKVV DKVTSTMQAS  660
SIPQTQEKID QYLSSSKPKL TKLVQGVFFC ALLQAYVEKF QKGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003846
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100038460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-15C3H family protein