PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003313 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 14750.8 Da PI: 10.3013 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.2 | 3.9e-15 | 15 | 103 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrse 89 ffkv + +lk + ++p++f++++g + + + tl ++g W++k+ + +++r +++++GW+ F++ L gDf+ F+++g s+ Lus10003313 15 FFKVI-RRESLKDKKSMIPRDFVRQCGRN--LQGKATLLAPNGLIWDMKIVKDDGDDRnakFWFKNGWQAFADNYSLSHGDFMSFQYNGGSN 103 67776.55666666799*********877..5559***************88555555577*************************998644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-17 | 8 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-18 | 9 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.039 | 14 | 121 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.00E-13 | 15 | 102 | No hit | No description |
SMART | SM01019 | 4.3E-11 | 15 | 120 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-12 | 15 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MEFPREEDNA QPLKFFKVIR RESLKDKKSM IPRDFVRQCG RNLQGKATLL APNGLIWDMK 60 IVKDDGDDRN AKFWFKNGWQ AFADNYSLSH GDFMSFQYNG GSNASSLESP SPYLMKRKRK 120 RETIHQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003313 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10003313 | 4e-90 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 2e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10003313 |