PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10003269

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 377aa MW: 42670.9 Da PI: 9.7705

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10003269	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.9	1.7e-52	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 lppGfrFhPtdeel+ +yL+kk+++ ++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + + + Lus10003269 14 LPPGFRFHPTDEELILHYLQKKLSSIPFPV-SIIADVDIYKFDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLISAFgdN 110 79**************************.89***********988899*********************************9987668 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kk Lvfykg+ pkg kt+W+mheyrl Lus10003269 111 HNNIGIKKALVFYKGKPPKGIKTNWIMHEYRL 142 888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-64	4	174	IPR003441	NAC domain
PROSITE profile	PS51005	61.853	14	174	IPR003441	NAC domain
Pfam	PF02365	3.8E-27	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MAMMMKRRSP GSSLPPGFRF HPTDEELILH YLQKKLSSIP FPVSIIADVD IYKFDPWDLP 60 AKATFGEKEW YFFSPRDRKY PNGARPNRAA ASGYWKATGT DKLISAFGDN HNNIGIKKAL 120 VFYKGKPPKG IKTNWIMHEY RLSDPSSNYS SKTIRSKGSS MRLDDWVLCR IYKKTHSNLS 180 HNRPQTSSST TTVSSSDQDY EDKDQNYHQK QLSSQQTLFS FPSSKSPMIN NQHQVTPLMP 240 QKSSSFSNLL DAILSDPQFT FSSAGFESFP TEPTAYGADN ISNDGNYLYH KLPQLQSNNS 300 STTMALPNVE MTMMHNRPKR ERSTGNEDLS SMVNPLKKAM ASSRSHDVDD HNNGFLNYQM 360 ALNQQLLLSH HLQFQG*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MAMMMKRRSP GSSLPPGFRF HPTDEELILH YLQKKLSSIP FPVSIIADVD IYKFDPWDLP  60
AKATFGEKEW YFFSPRDRKY PNGARPNRAA ASGYWKATGT DKLISAFGDN HNNIGIKKAL  120
VFYKGKPPKG IKTNWIMHEY RLSDPSSNYS SKTIRSKGSS MRLDDWVLCR IYKKTHSNLS  180
HNRPQTSSST TTVSSSDQDY EDKDQNYHQK QLSSQQTLFS FPSSKSPMIN NQHQVTPLMP  240
QKSSSFSNLL DAILSDPQFT FSSAGFESFP TEPTAYGADN ISNDGNYLYH KLPQLQSNNS  300
STTMALPNVE MTMMHNRPKR ERSTGNEDLS SMVNPLKKAM ASSRSHDVDD HNNGFLNYQM  360
ALNQQLLLSH HLQFQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-76	13	177	19	171	NAC domain-containing protein 19
3swm_B	3e-76	13	177	19	171	NAC domain-containing protein 19
3swm_C	3e-76	13	177	19	171	NAC domain-containing protein 19
3swm_D	3e-76	13	177	19	171	NAC domain-containing protein 19
3swp_A	3e-76	13	177	19	171	NAC domain-containing protein 19
3swp_B	3e-76	13	177	19	171	NAC domain-containing protein 19
3swp_C	3e-76	13	177	19	171	NAC domain-containing protein 19
3swp_D	3e-76	13	177	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10003269

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022718970.1	1e-122	NAC transcription factor 47-like
Swissprot	Q84TD6	1e-108	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A061F249	1e-115	A0A061F249_THECC; NAC domain containing protein 47, putative isoform 2
STRING	Lus10003269	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-100	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	Lus10003269

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]