PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10002483 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 259aa MW: 29361.4 Da PI: 9.3247 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.6 | 8.9e-31 | 12 | 66 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rF eav+qLGG+++AtPk il++m+++ Lt++hvkSHLQkYR+ Lus10002483 12 KERLRWTQELHDRFEEAVNQLGGPDRATPKGILKAMGIPRLTIYHVKSHLQKYRI 66 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.586 | 9 | 69 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 10 | 67 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-17 | 10 | 66 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 12 | 67 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.9E-10 | 14 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.1E-17 | 97 | 141 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MGSSRSDGAT NKERLRWTQE LHDRFEEAVN QLGGPDRATP KGILKAMGIP RLTIYHVKSH 60 LQKYRISKFI PETPNRGMER RNISEMLPNF SATSGAQLNE ALQMQLEVER RLSDHLDVQR 120 NLKLKIEAQG RFLERMVEEH KNRAAAFSKT KLFPTMSMPS LCDESESNND KGDESDSEGE 180 RVEVQSGEVF RALKRLRTDN DVVLPPRYKI VGPAAEPLVK NMMYVQKDAK FSYPTQGINF 240 AWNNMASSCP SPLVPSYF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-21 | 12 | 69 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-21 | 12 | 69 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-21 | 12 | 69 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-21 | 12 | 69 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10002483 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308222.2 | 1e-120 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 3e-50 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | B9HCX3 | 1e-118 | B9HCX3_POPTR; Uncharacterized protein | ||||
STRING | Lus10002483 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-52 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10002483 |