PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10002435 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 35673.7 Da PI: 6.9858 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.6e-14 | 15 | 61 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW++eEd+ll+ ++ G g+W++ ++ g++R++k+c++rw +yl Lus10002435 15 GRWSAEEDQLLAGYIVANGEGSWRSLPQNAGLKRCGKSCRLRWVNYL 61 9********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.6e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +t E e ++++++ lG++ W+tIa+ ++ gRt++++k++w+++l Lus10002435 67 RGNISTAEAETILNLHTCLGNR-WSTIASQLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.015 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.25E-25 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-6 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 19.987 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-22 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-11 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-11 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.95E-7 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGRKPCCDKE GLKTGRWSAE EDQLLAGYIV ANGEGSWRSL PQNAGLKRCG KSCRLRWVNY 60 LKSDIKRGNI STAEAETILN LHTCLGNRWS TIASQLPGRT DNEIKNYWNS HLSRNTHSFI 120 GPTAPQPNLA TLVADMAKVV TTVVANTKRG RKTNNSSSKR TKNDKTNISK DTRTNVVSEP 180 SVVEKAVVTI NGPETGLATT TKHPSPISYI SDETTCSGVM KVQQYNASLS SATEIPASPW 240 EKSFLYYEQW DMDKDWDDVV SYCTKTSTMD STVNQLIGWS WELYAGDCGL EAGRHNGVLE 300 FDDRDNDDND KQTGFVDWLL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-20 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 1e-19 | 12 | 114 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10002435 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523975.1 | 3e-67 | PREDICTED: transcription factor MYB12-like isoform X2 | ||||
TrEMBL | A0A0S2T0F2 | 1e-65 | A0A0S2T0F2_ERYLE; Light areas 1 | ||||
STRING | Lus10002435 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 8e-65 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Lus10002435 |