PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002337
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 427aa    MW: 46008.4 Da    PI: 10.4523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002337genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08274321455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Lus10002337 274 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 321
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16268335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.38E-10268325No hitNo description
PROSITE profilePS5088815.523270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16270335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-6274321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSKVQIFING GRILPQRISA PATPSAFRPT HFQFRRPPPI RQLGKVNGSG SQRRPPVRIG  60
AELHGFLSGR GSGDTPPLMG MNSATTVADF SADPGFAERA ARFSCFGSRS FNGRACQTGL  120
HHQLPPSMNG CGSKLPRVSS SPSLKVLGSQ KGNKGGSPSP SPLAELGNSS PSPEESSLSE  180
HRIPISAADP NPKKRKSAPK GKSVSQANAA TTKETEAQEN PNAKRSKGNG NHDGGEEKQS  240
NKANSKAAAA AKAAEEAPKD YIHVRARRGQ ATDSHSLAER VRREKISERM KFLQDLVPGC  300
NKVTGKALML DEIINYVQSL QRQVEFLSMK MASVNTTRLD FNLDSLPSKD RQRQLCHSSS  360
SXSATAAAAA QFDQNILSLH SQLPSLDSFH HDQFQTFCDE DLQSIVQMAT NMPEAAYLGF  420
SFQLHH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002337
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534345.11e-110transcription factor bHLH62
SwissprotQ9FJL47e-80BH078_ARATH; Transcription factor bHLH78
TrEMBLB9T7X61e-109B9T7X6_RICCO; Transcription factor, putative
STRINGLus100023370.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.15e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]