PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002204
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 523aa    MW: 59381.8 Da    PI: 4.3615
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002204genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS141.86.8e-441505214374
         GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lL +  ea++ +++ela+ ++a +se +sp+gd+++Rla+ + + L++ +             ++++    ++  +a+++f++++P+ +f+h++aN+a
  Lus10002204 150 LLKAYGEAMEGDHMELAEVIMASVSEKVSPAGDSLERLAFNLSQDLRKEVDY----------IKQEA---LKNYESAFRAFYQIFPYGRFAHFAANSA 234
                  66677899999************************************99998..........34444...667778999******************* PP

         GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..........skeeleetgerLakfAeelgvpfefnvlvak..rl 186
                  ++e++  + e +Hi+Dfdi++G+QWp+ +++L+ R +g  s+ +T+v++  +              + ee+++rL +  +++g+++e++ +  +  r 
  Lus10002204 235 MVESIPIAtESIHIVDFDIGEGVQWPPVIDTLS-RMRGVKSVNLTAVNDWGEMefsetelgcpAMWNFEEVKRRLVDHSNRVGLKMEIRGIRIEdlRE 331
                  *****98889**********************7.678999********97666787888888888889**********************94441233 PP

         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl...sPkvvvvveqeadh..ns.esFlerflealeyysalfdsleaklpre 278
                  e+ + ++ ++k+ E  + n+++ l ++   +v +++  de+L+l ++l   s  +v+  e ea    n+ + F   f   +eyy +l++s+e ++p+ 
  Lus10002204 332 EMERRKNKKMKKLEWCVFNCMVGLPHMR--RVRSRKLVDEFLELGNKLvneSGGIVTRGEGEAWEslNDcSGFGSFFEGNMEYYRSLLESIELNFPEL 427
                  333556667788***************7..78888889****999888444667********533246625677777779****************** PP

         GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvS.aW 373
                  +e+r+ +E  ++++     +++eg  rr  +   e   ++ ++  +k+ ++s++  ++ak ++++   s g r++ ee +++vl Wk+ pLv vS +W
  Lus10002204 428 AEARMALECLFVAP----FISAEGWFRRWSE-MGEIQDKKEGAPTMKKWRVSKESSEEAKEMVNERMtSYGVRIDgEEGEEMVLEWKGSPLVKVSsVW 520
                  ********996665....6788988744332.23333455567789*****************99998999999977888999*********986268 PP

         GRAS 374 r 374
                  r
  Lus10002204 521 R 521
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.526121510IPR005202Transcription factor GRAS
PfamPF035142.3E-41150521IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MTNLQEEFLN IQPSWPFYNV INSHFDHDQS YGHDHSPTDF PLPPTSDDME DIMADSSFHQ  60
FSSILTDDVS QHSDDGLGMM NMMVTLSTDE LMMGLDQFDP SFTDSEANSN YPSPSPIQSP  120
SLSNSAMEVA NLNIPGEGSE LGNEISVFNL LKAYGEAMEG DHMELAEVIM ASVSEKVSPA  180
GDSLERLAFN LSQDLRKEVD YIKQEALKNY ESAFRAFYQI FPYGRFAHFA ANSAMVESIP  240
IATESIHIVD FDIGEGVQWP PVIDTLSRMR GVKSVNLTAV NDWGEMEFSE TELGCPAMWN  300
FEEVKRRLVD HSNRVGLKME IRGIRIEDLR EEMERRKNKK MKKLEWCVFN CMVGLPHMRR  360
VRSRKLVDEF LELGNKLVNE SGGIVTRGEG EAWESLNDCS GFGSFFEGNM EYYRSLLESI  420
ELNFPELAEA RMALECLFVA PFISAEGWFR RWSEMGEIQD KKEGAPTMKK WRVSKESSEE  480
AKEMVNERMT SYGVRIDGEE GEEMVLEWKG SPLVKVSSVW RN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1516542221271GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526659.21e-154nodulation-signaling pathway 2 protein
TrEMBLA0A2K1XEP91e-150A0A2K1XEP9_POPTR; Uncharacterized protein
STRINGLus100022040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.19e-17RGA-like 2