PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002083
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 632aa    MW: 70987 Da    PI: 6.6525
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002083genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.51.7e-2957754128
          NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ +   +++g+kk+Lvfy g+ap+g+kt+W+mheyrl
  Lus10002083   5 GEKEWYFFSPRDRKYPNGSRPNRAAGAGYWKATGVDKPIGK--PKVMGIKKSLVFYAGKAPRGVKTNWIMHEYRL 77 
                  689************************************98..789***************************98 PP
2NAM148.92.5e-463324581128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  lppGfrF P+d+elvv+yLkkk++g++l++ + i ev++yk++P +  +++++ +e ewyfF++rd+ky++g+r+nra+ +gyWkatg dk++++ k+
  Lus10002083 332 LPPGFRFCPRDDELVVHYLKKKASGEPLPM-NKILEVNLYKFDPDTVSATCEGtGEGEWYFFTPRDRKYPNGDRPNRAAGNGYWKATGADKKIVV-KN 427
                  79****************************.77**************9544441666**************************************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   +vgl+k Lv+y g+ pkg+k++W+mhey+l
  Lus10002083 428 VVVGLRKALVYYYGKPPKGVKSNWIMHEYKL 458
                  9****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.7341105IPR003441NAC domain
SuperFamilySSF1019415.75E-353105IPR003441NAC domain
PfamPF023654.3E-14977IPR003441NAC domain
SuperFamilySSF1019412.88E-55329489IPR003441NAC domain
PROSITE profilePS5100553.697332489IPR003441NAC domain
PfamPF023653.6E-25333458IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MAMYGEKEWY FFSPRDRKYP NGSRPNRAAG AGYWKATGVD KPIGKPKVMG IKKSLVFYAG  60
KAPRGVKTNW IMHEYRLANV DRSASAGKKS GLRLDDWVLC RLYNKKGRME KHFPATVKLQ  120
PWSPSEEEMK PNVDEMVQNL MQMEKPECSL MPPSSSGEHG EEWSPPEGHP DSNGGNGFGF  180
DLDIWDFEVG FARDEARLAS ENRVQNDFIF GVTIILLALS YKKKLYSQRK VSPIRNPSRP  240
LPITASTTPL LTSNTNNGTS NITIPILNTK DSPTPPQVLP YVLPLFRASP AAICSFSPME  300
LDDQETVVIK NEGGANDDYA DQDHHHEVVD SLPPGFRFCP RDDELVVHYL KKKASGEPLP  360
MNKILEVNLY KFDPDTVSAT CEGTGEGEWY FFTPRDRKYP NGDRPNRAAG NGYWKATGAD  420
KKIVVKNVVV GLRKALVYYY GKPPKGVKSN WIMHEYKLAD SRVQSTRTQR TDKSDMRLDD  480
YILCRIYRKS ERARNSRYTG YDEEAHDLLG QEDSPAAAAT SPSTSSLIIN PTGQTPSFQH  540
HPPPQQQLPA ALPWQDNNAL GVPSNNPLQQ QPMTYMNNYV NEYNEDLGRD WSALDLDCLA  600
RCLDGDNEYV PPLPVDDGMD YGIIDPNSFI L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-5524905174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in disease resistance response (PubMed:16115070, PubMed:19625399). May function as repressor of pathogenesis-related proteins (PubMed:16115070). May function in the regulation of host basal defense responses against viral infection (PubMed:19625399). Transcriptional activator involved in responses to wounding and infection with tobamovirus (TMV) (PubMed:22937923). Binds to the DNA sequences 5'-AAAATATCT-3' and 5'AGATTTTT-3' of CYP734A1/BAS1 and CYP72C1/SOB7 promoters, respectively. Acts as suppressor of the brassinosteroid (BR)-inactivating enzymes CYP734A1/BAS1 and CYP72C1/SOB7, and prevents their expression in almost all tissues. Plays a central role in integrating BR homeostasis and seedling development. Regulates the spatial regulation of BR homeostasis and participates in the regulation of hypocotyl elongation and root growth by suppressing BR catabolism. Mediates connection between BR catabolism and photomorphogenesis (PubMed:26493403). Binds to, and transactivates the promoter of the auxin biosynthetic gene NIT2 (PubMed:22965747). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16115070, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:19625399, ECO:0000269|PubMed:22937923, ECO:0000269|PubMed:22965747, ECO:0000269|PubMed:26493403, ECO:0000269|PubMed:26518251}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002083
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, salicylic acid (SA), methyl jasmonate, drought stress, dark and sucrose starvation (PubMed:16115070). Induced by chitin elicitor (chitooctaose) (PubMed:17722694). Induced by salicylic acid and infection with tobamovirus (TMV) (PubMed:19625399). By indole-3-acetonitrile, salicylic acid (SA), sodium nitroprusside (SNP), salt stress and drought stress (PubMed:22965747). Down-regulated by brassinosteroid (BR) and transition from dark to white light (PubMed:26493403). {ECO:0000269|PubMed:16115070, ECO:0000269|PubMed:17722694, ECO:0000269|PubMed:19625399, ECO:0000269|PubMed:22965747, ECO:0000269|PubMed:26493403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C5981e-67NAC81_ARATH; Protein ATAF2
STRINGLus100020830.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.16e-70NAC family protein
Publications ? help Back to Top
  1. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]