PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002082
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 774aa    MW: 85732 Da    PI: 7.1034
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002082genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08195215425
                  ---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                  +lC+ f + G C++G++C+F+H
  Lus10002082 195 PLCKEFVA-GRCRRGSQCQFIH 215
                  79******.************* PP
2zf-CCCH20.21.1e-06304323525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C+ffa +G C+ G+rC+F+H
  Lus10002082 304 PCKFFA-SGNCRNGNRCRFSH 323
                  8**555.5************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-4191217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558191218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5194216IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-5195215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5196217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309299326IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5301325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6301324IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5303323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5303325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MAKREASLAL AVSRFPLPAF PIEFLKASSS EILLLNREQK GGSLHKMSGG SRKRSSKWDL  60
KEESLASYES QHNNSSRSGK ADSSYHKTDG GDRSRWSNSE HRRASRDDLI GDEYGRTSKS  120
MSWERDDNYG PRMSPGLDER RHRSRRPSPS PVKEWTRTRR NGSNSRSRSR SPVHSIRRDS  180
GTYERSRSRS SVTAPLCKEF VAGRCRRGSQ CQFIHESAQL YEESWDGRKK TVSSRYHASN  240
DPEEHPSGSG QNVDGKYLRH SASDAAGKGS KDDIVRERDL DRRHGVASID RHDEQPTHRV  300
TDKPCKFFAS GNCRNGNRCR FSHQVEAGVS PERRPRDDEK RLDDQDIDIR EKTWDGPLWS  360
DVDNYSTAAK SGRDVENLLN GGKYNEPNDL SDAGPTVEPW SVDSSRVQSL DGREALDHQS  420
PANLVESDRS ETLKVKEDQS IQNDWEGDME MSPEWNHGPA NNLDSIAMEV SVLGDDATVA  480
VQQSTHERPA IHSVYYSREL GAREAEGLVI NRSGTAPNAN RDGASPNALP ILSSTNSVEQ  540
IRMGTLPDHT GGETAINPLN VDSGIPSSQN VVSNEQVSKL TNLSASLAQL LGQGQQLPQL  600
YAAHGSDPSN GDREKDSADG GVQVAAPNGS HEKVLQGTEE VPESDNPKPS EESVAKESSG  660
SKAKESKARE EKIDDEKGEE EDKKSKEAKV LRAFKFALVE FVKEALKPAW KEGQVSKDSY  720
KNIVKKVVDK VTSTMQASSI PQTQEKIDQY LLASKPKLTK LVQAYVEKFQ KGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8306651e-35EU830665.1 Linum usitatissimum clone LU0028B04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100020820.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-17C3H family protein