PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10001809

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 247aa MW: 27843.6 Da PI: 9.6214

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10001809	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.3	1e-51	14	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp e+e yfFs+++ ky++g+r+nrat sgyWkatg dk++++++++ Lus10001809 14 LPPGFRFHPTDEELVVQYLKRKVYSFPLPA-SIIPEVDVCKSDPWDLPGD---LEQERYFFSTKEAKYPNGNRSNRATGSGYWKATGIDKQIVAASKT 107 79**************************.89***********54...46799************************************ PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktLvfy+g+ p+g +tdW+mheyr+ Lus10001809 108 VVGMKKTLVFYRGKPPHGARTDWIMHEYRF 137 **************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-61	5	160	IPR003441	NAC domain
PROSITE profile	PS51005	57.334	14	160	IPR003441	NAC domain
Pfam	PF02365	6.6E-27	15	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEKMSFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVYSFP LPASIIPEVD VCKSDPWDLP 60 GDLEQERYFF STKEAKYPNG NRSNRATGSG YWKATGIDKQ IVAASKTVVG MKKTLVFYRG 120 KPPHGARTDW IMHEYRFLPS PSDAPHQRME NWVLCRIFLK KRGSKNEEDA GCCIKQLGSS 180 NQTVTKHVKP ALTKKPVFYD FMTKPCGSSS GTSGITDDVS NNETDEHEEN SSSGNTSSFP 240 HFRRKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	12	165	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	12	165	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	12	165	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	12	165	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	12	165	18	173	NAC domain-containing protein 19
3swm_B	2e-52	12	165	18	173	NAC domain-containing protein 19
3swm_C	2e-52	12	165	18	173	NAC domain-containing protein 19
3swm_D	2e-52	12	165	18	173	NAC domain-containing protein 19
3swp_A	2e-52	12	165	18	173	NAC domain-containing protein 19
3swp_B	2e-52	12	165	18	173	NAC domain-containing protein 19
3swp_C	2e-52	12	165	18	173	NAC domain-containing protein 19
3swp_D	2e-52	12	165	18	173	NAC domain-containing protein 19
4dul_A	2e-52	12	165	15	170	NAC domain-containing protein 19
4dul_B	2e-52	12	165	15	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10001809

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881782.1	1e-121	NAC domain-containing protein 83-like
Refseq	XP_015902286.1	1e-121	NAC domain-containing protein 83-like
Swissprot	Q9FY93	5e-91	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2P5F209	1e-116	A0A2P5F209_TREOI; NAC domain containing protein
STRING	Lus10001809	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-93	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Lus10001809

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]