PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10001648

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 337aa MW: 37712.6 Da PI: 7.862

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10001648	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.7	1.5e-55	22	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv + ++++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ Lus10001648 22 LPPGFRFHPTDEELISHYLYNKVIDVRFSC-RAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKS 117 79**************************.89***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfykgrapkgek++Wvmheyrl Lus10001648 118 LVGMKKTLVFYKGRAPKGEKSNWVMHEYRL 147 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-64	17	172	IPR003441	NAC domain
PROSITE profile	PS51005	59.045	22	172	IPR003441	NAC domain
Pfam	PF02365	3.3E-29	23	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MENNVACGVE MVMEEEDDQM DLPPGFRFHP TDEELISHYL YNKVIDVRFS CRAIGDVDLN 60 KSEPWELPWK AKMGEKEWYF FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIYRGKSLVG 120 MKKTLVFYKG RAPKGEKSNW VMHEYRLDGK FSIHNLPKTA KNEWVICRVF QKTCGGKKIH 180 ISGITRFGEL QGHHHNSSTM LPPLMESPSA NYDQKFTIKP AVAAESSSAY VPCFSNLITN 240 MNTTNNSSTS SSQFLSNPII PSSSSSSIPL FPSSHYNSQL IPSANFGQYN DNSILLRALM 300 ADKQGGGGGS TLNLMNSTEI SPSVTGPVDL DSIWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-55	8	178	1	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-55	8	178	1	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-55	8	178	1	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-55	8	178	1	171	NO APICAL MERISTEM PROTEIN
4dul_A	7e-55	8	178	1	171	NAC domain-containing protein 19
4dul_B	7e-55	8	178	1	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10001648

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012080293.1	1e-134	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	R4N7I9	1e-133	R4N7I9_JATCU; NAC transcription factor 002
STRING	Lus10001648	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-117	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Lus10001648

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]