PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001149
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 297aa    MW: 32574.4 Da    PI: 7.3544
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001149genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.9e-32100153255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  prlrWtp LH++Fv+av++LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+
  Lus10001149 100 PRLRWTPHLHHCFVHAVDRLGGEDRATPKMVLQMMDVKGLTISHVKSHLQMYRS 153
                  8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.50396156IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-3196155IPR009057Homeodomain-like
SuperFamilySSF466895.91E-1599154IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23100154IPR006447Myb domain, plants
PfamPF002496.5E-7101152IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKRAHHHGDH GAGSGEIMTM MRRRQLGHGL MKENSSSSSS SSSTNSFIIQ SSSLTSATVG  60
CNPADAAATG LILGTCAAGS IDQQQKQQQV VRSYVRSKLP RLRWTPHLHH CFVHAVDRLG  120
GEDRATPKMV LQMMDVKGLT ISHVKSHLQM YRSMKHEQVM QEAAAGAGLN KGAQLIGHDY  180
QTSPIYYDDY HDHARLPERE DAVATEGVVT RYAHDDADDN NHHNYYIIFN DLLKNCDKGP  240
DLIPSTSGST TFDDNQGPFL SLSMGYPENL RLNLNSNVKP AQARVTNHVS VDLTLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-19101156459Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-19101156459Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-19101156358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-19101156358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-19101156358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-19101156358Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-19101156459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-19101156459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-19101156459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-19101156459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-19101156459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-19101156459Protein PHOSPHATE STARVATION RESPONSE 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001149
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020541306.14e-44putative Myb family transcription factor At1g14600 isoform X2
STRINGLus100011490.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93812840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-30G2-like family protein