PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000940
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 427aa    MW: 46603.6 Da    PI: 4.6935
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000940genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573116.12.1e-36110205297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  lfqrlw++eDei lLqG+ ++++++g  +++d+  fy++++++++++++k+qlveK+rrLKkK+++  +k++sgk++sf+++hdq +fe+s+kiW 
  Lus10000940 110 LFQRLWTDEDEIELLQGFYEYTSQRGGGSHHDTAMFYDQIRSKLQLDFNKNQLVEKLRRLKKKYRNVLSKIESGKDFSFKSSHDQVTFEISRKIWS 205
                  79*********************************************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-34111205IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAAVHDDAVY DLDDEEESSY DDDLENDDVL AVEEEEDEED LNSVPSPSTP SPAAVPTAVV  60
ALPVAVPSAS LVTVASAASN GSDPHKIRAA MGMVTVPTHT PQPLDKSRQL FQRLWTDEDE  120
IELLQGFYEY TSQRGGGSHH DTAMFYDQIR SKLQLDFNKN QLVEKLRRLK KKYRNVLSKI  180
ESGKDFSFKS SHDQVTFEIS RKIWSSTGKL ASVEDGNLDE EEGNPNLNSN FNPNLNNSGF  240
NDGGMEIKVE DQKSTPRSRK RPRPRSLATP LPLNSPLVPL FSPNSYGGSH GSGGAAGGGN  300
VGVKMEDKRF HNDVLGSNNE VNNGNTSHSN LSVPGLIEET VKSCLSPLFK ELLNNNTTAS  360
GSGIGGRGIG GLAMNAMPLS FGGIDMMADE KWRKQQILEL EVYSKRLELV QDQVRSQLEE  420
LRSLGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258264RKRPRPR
2259263KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089211.11e-135probable transcription factor At3g04930
TrEMBLA0A067JI481e-133A0A067JI48_JATCU; Uncharacterized protein
STRINGLus100009400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-53DNA-binding storekeeper protein-related transcriptional regulator