PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000807
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 289aa    MW: 32366.9 Da    PI: 5.8995
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000807genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57387.61.6e-27123223298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                  lfq++ws++Dei lLqGl+   +++g      + + ++++fy+ +k +isf+v+ sq+ +K+r+LK Kf ++ +k  +g+ ++f+++h q + +ls++
  Lus10000807 123 LFQKIWSDDDEIKLLQGLVIKYSRKGNgvdpaEMQIHWSDFYNSIKPCISFDVNLSQVKDKVRKLKAKFLNHFNK-GTGEGTRFTEPHHQLCSDLSMM 219
                  69***************9754455544446644445***************************************.9999****************** PP

       DUF573  95 iWgs 98 
                  iWgs
  Lus10000807 220 IWGS 223
                  **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-22124222IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAPQHPEEEE ISAASNKPVD KSHSEGSDSD DHSNSASEEQ DLAPPSNKPL NAESEAEESP  60
TGPKINNVTA PTETPKNVTP PPARKKRGNE ETEGEEGNKA KRGRNEQVAV DVQKSAQSTS  120
NHLFQKIWSD DDEIKLLQGL VIKYSRKGNG VDPAEMQIHW SDFYNSIKPC ISFDVNLSQV  180
KDKVRKLKAK FLNHFNKGTG EGTRFTEPHH QLCSDLSMMI WGSSNAKTTT LRPRRNINNN  240
EEVSCRVPLR MDKKWNNFYA ASFELMIKRY ALLIDEANLM RASMDEDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000807
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100008070.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01260.13e-17DNA-binding storekeeper protein-related transcriptional regulator