PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G01260.1 | ||||||||
Common Name | A_IG002N01.32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 325aa MW: 36223.9 Da PI: 9.7202 | ||||||||
Description | DNA-binding storekeeper protein-related transcriptional regulator | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 111.3 | 6.4e-35 | 106 | 205 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskki 95 lf rl++eeDe +lLqG++df++k++ +psd+id+fye +k+sisf+v+k qlv+Ki +LKkKf+++v+k k+++ ++fsk++dq++f+ls+ki AT4G01260.1 106 LFVRLFTEEDEAILLQGFLDFATKKE-NPSDHIDDFYESIKNSISFDVTKPQLVTKIGNLKKKFNGRVSKglkkGKNEEVMVFSKASDQNCFDLSRKI 202 799******************88888.****************************************99988778899999***************** PP DUF573 96 Wgs 98 Wgs AT4G01260.1 203 WGS 205 *95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.4E-26 | 107 | 204 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAPKQLKKIE NPVVSSSEEE ESASSGESAT SGEESDSSAD SPVKESSKKP VVVSKPSGSK 60 TTTKPESSTA AKRSFEKTDE MSKKKSKNSM GEEDVKKKDE TLKKNLFVRL FTEEDEAILL 120 QGFLDFATKK ENPSDHIDDF YESIKNSISF DVTKPQLVTK IGNLKKKFNG RVSKGLKKGK 180 NEEVMVFSKA SDQNCFDLSR KIWGSNGVLY SKSKNMRQVQ LGGSVKVDED DQEPQKHRFV 240 ISTLSSGQEL VSYLKVENPN SLGVDDTKWS AKLDKIKDGK QKRKMEKNLK KIQAKEEELS 300 MMRSEFVAAV TNVLSKQDNA SYSCK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18411584 | 0.0 | ||||
Expression Atlas | AT4G01260 | - | ||||
AtGenExpress | AT4G01260 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G01260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G01260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161491 | 0.0 | AL161491.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | IG002N01 | 0.0 | AF007269.1 Arabidopsis thaliana BAC IG002N01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_192035.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | O04608 | 0.0 | STKLR_ARATH; Probable transcription factor At4g01260 | ||||
TrEMBL | A0A178UTW1 | 0.0 | A0A178UTW1_ARATH; Uncharacterized protein | ||||
STRING | AT4G01260.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19132 | 7 | 7 | Representative plant | OGRP4222 | 5 | 23 |
Link Out ? help Back to Top | |
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Phytozome | AT4G01260.1 |
Entrez Gene | 828088 |
iHOP | AT4G01260 |
wikigenes | AT4G01260 |
Publications ? help Back to Top | |||
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