PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10000750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 28166.3 Da PI: 8.3166 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.7 | 5.8e-15 | 23 | 102 | 15 | 96 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +p +f+++hg++ s +l+l+++ g v + +++++++++ GW++Fv++ng++e D++vF+++g++ + +v v Lus10000750 23 KVKIPDSFMAQHGEN--LSGKLVLMSTYGDPVVVSVERssVGGRQWFFFKHGWSNFVEENGVEEHDSLVFHFTGDRAA--NVVV 102 578*********966..7889********77777773333777788*************************9998777..4444 PP | |||||||
2 | B3 | 44.3 | 3.3e-14 | 144 | 212 | 16 | 85 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 ++p +f ++ +++ ++ +++led+sg++W+v +i ++++++ l++GW +Fv an+L+ gD + F ++ Lus10000750 144 KYIPMEFHDATELS--QGDKVQLEDPSGEVWSVSVIAgDRRGRQLRLAGGWPDFVAANRLEIGDGLEFCFK 212 58999999888888..5669***************998999999********************9988754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-18 | 4 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-19 | 6 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.194 | 9 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.46E-8 | 10 | 95 | No hit | No description |
SMART | SM01019 | 2.1E-9 | 12 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-12 | 23 | 102 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.83 | 129 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0031 | 133 | 225 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-15 | 135 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-14 | 142 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.6E-12 | 143 | 212 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.16E-11 | 145 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MKKQQQPQTP SFLKLYTGEC DEKVKIPDSF MAQHGENLSG KLVLMSTYGD PVVVSVERSS 60 VGGRQWFFFK HGWSNFVEEN GVEEHDSLVF HFTGDRAANV VVYDSSGCVK GLTVKKQQAG 120 SLTKKSFGMG MMMKKQSMPL FQEKYIPMEF HDATELSQGD KVQLEDPSGE VWSVSVIAGD 180 RRGRQLRLAG GWPDFVAANR LEIGDGLEFC FKAEGLIQVK IDRKKKKKKV IASDVKKEEE 240 QGMVCIGRGL TD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 227 | DRKKKKK |
2 | 222 | 228 | RKKKKKK |
3 | 224 | 236 | KKKKKVIASDVKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10000750 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10000750 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 2e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10000750 |