PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10000748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 234aa MW: 26450.4 Da PI: 8.0791 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.3 | 2.7e-13 | 19 | 92 | 14 | 90 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + l +p +f+++h+++ + +l l ++g+ v + r+++g++++t GW +Fv++n+L++ D+v F+++g ++ Lus10000748 19 KELKIPDPFMDQHSQI--LPDKLALILRNGNPVVVSV-ERRSKGQCFFTLGWTHFVEENNLEDDDIVFFYFHGVRTV 92 4599*********877..6678999999999999999.4677777*************************8775444 PP | |||||||
2 | B3 | 33.7 | 6.4e-11 | 144 | 217 | 12 | 86 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +++++++p f ++ g+k + +led++g++W++ + k ++ l+ GW+eF ++n++++gD + F l++ Lus10000748 144 SRRQMRIPAVFSDSAGLKVGG--NAVLEDPNGKVWSIVVGAtGVKCRQNQLSIGWSEFIRENEVEDGDKLSFFLKS 217 45679*******999998655..6***************66455555689********************998654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-16 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-14 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.53 | 6 | 100 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.69E-8 | 7 | 98 | No hit | No description |
SMART | SM01019 | 5.8E-4 | 9 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 19 | 93 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-15 | 129 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.856 | 133 | 228 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.51E-14 | 134 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.0E-9 | 136 | 228 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.39E-8 | 136 | 215 | No hit | No description |
Pfam | PF02362 | 2.7E-9 | 144 | 216 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEKDEQPSFV KIFHGGLAKE LKIPDPFMDQ HSQILPDKLA LILRNGNPVV VSVERRSKGQ 60 CFFTLGWTHF VEENNLEDDD IVFFYFHGVR TVKIVVYDLL GCLKGVKLTY QGSAEPINVG 120 TRRYNRADSK EREKWFEVII KPHSRRQMRI PAVFSDSAGL KVGGNAVLED PNGKVWSIVV 180 GATGVKCRQN QLSIGWSEFI RENEVEDGDK LSFFLKSNLI QVKIQKEGVV VID* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10000748 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10000748 | 1e-171 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10000748 |