PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000206
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 193aa    MW: 22175.7 Da    PI: 4.8052
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000206genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.15.3e-3431201128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                  lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+ +e ++wyf+s++         +nr+t++g+Wk+ g +++++s+  +
  Lus10000206   3 LPPGFRFYPTDEELVVHFLHRKATLLPCHP-DVIPDLDLYPYDPWDLHGKALEEGNQWYFYSRK--------TQNRVTENGFWKTIGMEEPIISSsgN 91 
                  79*************************999.99**************977777899*****997........469*******************9777 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ vg+kk L+f+ g +    kt+W+m+e+rl
  Lus10000206  92 NRRVGVKKYLMFFLGGDV---KTNWIMEEFRL 120
                  778**********77665...6********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-451157IPR003441NAC domain
PROSITE profilePS5100543.2913158IPR003441NAC domain
PfamPF023651.2E-214120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNLPPGFRFY PTDEELVVHF LHRKATLLPC HPDVIPDLDL YPYDPWDLHG KALEEGNQWY  60
FYSRKTQNRV TENGFWKTIG MEEPIISSSG NNRRVGVKKY LMFFLGGDVK TNWIMEEFRL  120
PDPSSGTGTS TSRSSSRSTR SRSRPDYNKW VVCRVYERNS SDDEEDGSTG LSCLDEVFLS  180
LDDLDDISLP YN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-37116415171NO APICAL MERISTEM PROTEIN
1ut4_B3e-37116415171NO APICAL MERISTEM PROTEIN
1ut7_A3e-37116415171NO APICAL MERISTEM PROTEIN
1ut7_B3e-37116415171NO APICAL MERISTEM PROTEIN
3swm_A3e-37116418174NAC domain-containing protein 19
3swm_B3e-37116418174NAC domain-containing protein 19
3swm_C3e-37116418174NAC domain-containing protein 19
3swm_D3e-37116418174NAC domain-containing protein 19
3swp_A3e-37116418174NAC domain-containing protein 19
3swp_B3e-37116418174NAC domain-containing protein 19
3swp_C3e-37116418174NAC domain-containing protein 19
3swp_D3e-37116418174NAC domain-containing protein 19
4dul_A3e-37116415171NAC domain-containing protein 19
4dul_B3e-37116415171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000206
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130458.13e-92PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK69e-90NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A3P6AL416e-91A0A3P6AL41_BRACM; Uncharacterized protein
TrEMBLM4ESY56e-91M4ESY5_BRARP; Uncharacterized protein
STRINGLus100002061e-141(Linum usitatissimum)
STRINGLus100356471e-141(Linum usitatissimum)
STRINGLus100356481e-141(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.15e-70xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]