PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa019613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24323.1 Da PI: 6.8014 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp g ++r++lg+f+tae Aa+a++ a+ +++g Lsa019613 25 HYRGVRKRP-WGRYAAEIRDP---GTKTRVWLGTFDTAEAAARAYDTAAINFRG 74 6********.**********8...325***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-13 | 25 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-32 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-22 | 25 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-39 | 25 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.197 | 25 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.04E-23 | 25 | 84 | No hit | No description |
PRINTS | PR00367 | 3.2E-11 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVMKNETAKP VTAAGKVAAA ANEVHYRGVR KRPWGRYAAE IRDPGTKTRV WLGTFDTAEA 60 AARAYDTAAI NFRGSKAKIN FPPSLDGVTG GNYSQSSTVE STHSSRESEN NTPVELDLMR 120 CLVGEASSGG GYQFFVNGNQ QTVAFVPHAQ PIMFFGVQPE MAMNRAHQYP IHQMEQHFDG 180 GYGGRAESVS ESSSVADYIP RDTSYSKREI NLDLNLAPPT VEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-22 | 25 | 82 | 5 | 63 | ATERF1 |
3gcc_A | 7e-22 | 25 | 82 | 5 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023758260.1 | 1e-168 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2J6LQN9 | 1e-166 | A0A2J6LQN9_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-28 | erf domain protein 9 |