PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa019305

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

VOZ

Protein Properties

Length: 515aa MW: 58489.8 Da PI: 6.1553

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58689124	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-46777	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	398	2.1e-122	250	472	1	216
VOZ 1 pppsaflgpkcalwdctrpaqg..se.....wlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 pppsaflgpkcalwdc+rpaqg se w+++ycs +hat+a neg+pg+tpv+rpkgi+lkd+l faal ak+qgk vg+pecegaatakspwna+ Lsa019305 250 PPPSAFLGPKCALWDCPRPAQGwcSEravqwWCTNYCSGLHATIAQNEGQPGMTPVIRPKGIELKDNLPFAALCAKAQGKTVGVPECEGAATAKSPWNAP 349 89*****************955223344489*************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdek 193 elfdls++eget+rewlffdkprrafesgnrkqrslpdy+grgwhesrkqv++e g lkrsyymdpqp++ +ewhlyeyein++d++alyrlelklvd+k Lsa019305 350 ELFDLSVFEGETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVINESGWLKRSYYMDPQPMKFLEWHLYEYEINKYDTCALYRLELKLVDKK 449 ************************************************************************************************ PP VOZ 194 ksakgkvskdsladlqkklgrlt 216 ks+kgk++++s+ +lqk++grl+ Lsa019305 450 KSPKGKIANESVINLQKQMGRLK 472 *******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
PESLTSGDAI DHFEVEGTKF SLYDPNPCKS LTHSHLEYQN KCDCWREERE ITSYHSLLRM 60 RRGAKSHRIF KDRAMNRVDD LQGMFMDLQS ARKDSRNIDM AVLEEQVHQM LKEWKKELNE 120 PSPSPSLQQG ASLRSFSPDI SRLLQLYDEE DDATSGLAAP KPDPDAQNTT QNATFHKNFL 180 ATQMCQEQGV DTSFGINTTG VHNPGVDTQF DYISFDMPRG FEQNCNDGVY GMWGEDALPQ 240 IATYLPNICP PPSAFLGPKC ALWDCPRPAQ GWCSERAVQW WCTNYCSGLH ATIAQNEGQP 300 GMTPVIRPKG IELKDNLPFA ALCAKAQGKT VGVPECEGAA TAKSPWNAPE LFDLSVFEGE 360 TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQV INESGWLKRS YYMDPQPMKF 420 LEWHLYEYEI NKYDTCALYR LELKLVDKKK SPKGKIANES VINLQKQMGR LKGRGKGCAT 480 VYPDLSQTKR TLDGEYGGNT GFNYLIEDLG GYYLT

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

PESLTSGDAI DHFEVEGTKF SLYDPNPCKS LTHSHLEYQN KCDCWREERE ITSYHSLLRM  60
RRGAKSHRIF KDRAMNRVDD LQGMFMDLQS ARKDSRNIDM AVLEEQVHQM LKEWKKELNE  120
PSPSPSLQQG ASLRSFSPDI SRLLQLYDEE DDATSGLAAP KPDPDAQNTT QNATFHKNFL  180
ATQMCQEQGV DTSFGINTTG VHNPGVDTQF DYISFDMPRG FEQNCNDGVY GMWGEDALPQ  240
IATYLPNICP PPSAFLGPKC ALWDCPRPAQ GWCSERAVQW WCTNYCSGLH ATIAQNEGQP  300
GMTPVIRPKG IELKDNLPFA ALCAKAQGKT VGVPECEGAA TAKSPWNAPE LFDLSVFEGE  360
TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQV INESGWLKRS YYMDPQPMKF  420
LEWHLYEYEI NKYDTCALYR LELKLVDKKK SPKGKIANES VINLQKQMGR LKGRGKGCAT  480
VYPDLSQTKR TLDGEYGGNT GFNYLIEDLG GYYLT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023736720.1	0.0	transcription factor VOZ1-like isoform X1
Refseq	XP_023736722.1	0.0	transcription factor VOZ1-like isoform X1
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2J6K8X9	0.0	A0A2J6K8X9_LACSA; Uncharacterized protein
STRING	EOY28133	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]