PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa018948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | C3H | ||||||||
Protein Properties | Length: 414aa MW: 45697.6 Da PI: 8.2376 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2.1e-11 | 60 | 85 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Lsa018948 60 GEPDCSYYIRTGLCRFGATCRFNHPP 85 6899********************97 PP | |||||||
2 | zf-CCCH | 40 | 6.5e-13 | 104 | 130 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++CkF+H++ Lsa018948 104 PGQPECQYYLKTGTCKFGATCKFHHPR 130 5789*********************96 PP | |||||||
3 | zf-CCCH | 37.2 | 5e-12 | 152 | 176 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Lsa018948 152 EAECAYYLRTGQCKFGNTCKFHHPQ 176 689********************97 PP | |||||||
4 | zf-CCCH | 33.5 | 7.3e-11 | 281 | 307 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+ +tG Ck+G+ C+F+H++ Lsa018948 281 PGQPDCQFYIKTGDCKFGAVCRFHHPR 307 5789*********************96 PP | |||||||
5 | zf-CCCH | 38.9 | 1.4e-12 | 328 | 353 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF H++ Lsa018948 328 GEPLCIFYSRYGICKFGPSCKFDHPM 353 689*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.239 | 58 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 58 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-8 | 60 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 63 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-4 | 64 | 84 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.126 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-10 | 105 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 107 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-5 | 109 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 149 | 177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 149 | 176 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 151 | 177 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-10 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 155 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.352 | 280 | 308 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 280 | 307 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-6 | 282 | 307 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 285 | 309 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 286 | 308 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-7 | 326 | 353 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 326 | 354 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-10 | 328 | 353 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 329 | 353 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 331 | 351 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MTSFSGGGME FDSGIPMSRP PVTAEVSSSL SPPLNEDALW QLNLRSRESM ESGPYPVREG 60 EPDCSYYIRT GLCRFGATCR FNHPPNRKLA IATAKMRGEY PERPGQPECQ YYLKTGTCKF 120 GATCKFHHPR EKAGIAGQVS LNVLGYPLRP NEAECAYYLR TGQCKFGNTC KFHHPQPSNM 180 MVAFSGSPVY PAVQSPTSPG QQWSLTRASF VPSPRWQPPS NYAQMILPQG VGSVPGWNAY 240 RGSMGSLSSI DSQHQHQHQA ATGGNQGYYA LERENVFPER PGQPDCQFYI KTGDCKFGAV 300 CRFHHPRERV IPMPDCVLSP IGLPLRRGEP LCIFYSRYGI CKFGPSCKFD HPMGVFTYNL 360 SPNSSDRQHN MLASASGGSG VLNITSQGNM EGVSVTLSER IQMPSNDNSI DHQE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023729881.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2J6MJF7 | 0.0 | A0A2J6MJF7_LACSA; Uncharacterized protein | ||||
STRING | XP_008218439.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-174 | zinc finger protein 1 |