PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018766
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 173aa    MW: 19239.3 Da    PI: 6.9583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-12036PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-20453255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr ++ +gr++AeIrdp    k++r++lg+f+tae+Aaka++aa+++++g
  Lsa018766  4 HYRGVRKRP-WGRYAAEIRDPH---KKTRVWLGTFDTAEKAAKAYDAAAREFRG 53
               7********.**********62...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.41E-20361No hitNo description
SMARTSM003806.1E-39467IPR001471AP2/ERF domain
PfamPF008477.6E-14453IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-33462IPR001471AP2/ERF domain
PROSITE profilePS5103224.012461IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22462IPR016177DNA-binding domain
PRINTSPR003672.8E-11516IPR001471AP2/ERF domain
PRINTSPR003672.8E-112743IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEAHYRGVRK RPWGRYAAEI RDPHKKTRVW LGTFDTAEKA AKAYDAAARE FRGPKAKTNF  60
PMYDYNGLSQ YSPSQSSTVE SSSRDPEPVV AFDLNLSYGV AATSAVEKQN GFFTPPASQV  120
QMLYFNESLS AVRFRQHVVA HCEDSDSSSV VDGNPSSSPR LIGIDLNFPP PEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21462564ATERF1
3gcc_A2e-21462564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023743867.11e-127ethylene-responsive transcription factor 4-like
SwissprotQ9LW492e-36ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2J6MAE31e-126A0A2J6MAE3_LACSA; Uncharacterized protein
STRINGSolyc10g009110.1.17e-44(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-26erf domain protein 9