PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018363

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TCP

Protein Properties

Length: 321aa MW: 34475 Da PI: 7.693

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-39710	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.8	3.3e-37	48	143	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.........k 89 k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+ + + s + s+s+s +g + Lsa018363 48 KRGTTKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYTsLNISLRGSGSTSMAGptsylrnglS 143 7889**********************************************************9999977655555555555444334444444430 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.4E-36	51	158	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.048	52	106	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MEGHEDQTPF HRQNHPLQLL EERSGGVNGE EYSTTELQPA PKAKPLQKRG TTKDRHTKVD 60 GRGRRIRMPA VCAARVFQLT RELGHKSDGE TIEWLLQQAE PSVIAATGTG TIPANYTSLN 120 ISLRGSGSTS MAGPTSYLRN GLSFVTNQPT STSHFATPVT KDDEFCLDPR SIQMGVTSNY 180 MTQSTIPACH NQIPATAAFL MMGNRNSGST SPDTRSSRAF SGESTWNFPS TSNTSSNDNH 240 NSNLYNRGSS RTNLNGISDE DVGGGLHLMN FGAQTALLNG QQFGGGALPT TDGMLAALSS 300 IRPTYGGGSS YLINANTTRN E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023731371.1	0.0	transcription factor TCP15-like
TrEMBL	A0A2J6KL62	0.0	A0A2J6KL62_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-48	TCP family protein