PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018274

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 609aa MW: 65526.6 Da PI: 5.0741

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58694328	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-1314	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	417.2	1.4e-127	216	571	1	357
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lv++L++cAea+++++l+la++l+++ la +++ +m+++a+yf+eALa+r++r l+p++t+++ + + f+e++P+lkf+h+taNq Lsa018274 216 LVHTLMACAEAIQQENLSLAENLVKQAGMLAVSQAGAMRKVATYFAEALARRIYR--------LAPQTTQDSPAFQD-LLQMHFYETCPYLKFAHFTANQ 306 689**************************************************........55555553333333.33345************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 aIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++++ l+e+g++La++A++++v+fe++ +va++l+dle+ +L+++ +E Lsa018274 307 AILEAFAGKKKVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPSGDNTDHLQEVGWKLAQLADTIHVEFEYRGFVAESLADLEPAMLDLRDDE 406 ***********************************************99******************************************* PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...........lpreseerikvErel 289 ++aVn+v++lh+ll++++++e+ vL++vk+++P +++vveqea+hn+ Flerf+e+l+yys+lfdsle++ ++++s++++ +++++ Lsa018274 407 VVAVNSVFELHQLLARPGAVEK----VLSAVKEMKPVILTVVEQEANHNGLVFLERFTESLHYYSTLFDSLESSgtggggveggaISPASNQDKIMSEVY 502 ******************....*****************************************9999******999******** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357 lg++i+nvvaceg +r+erhetl +W++rl+++GF++v+l+++a kqa++ll+ ++ +dgyrvee++g Lsa018274 503 LGKQICNVVACEGPDRVERHETLTQWKARLDSSGFEAVHLGSNAFKQASMLLALFAgGDGYRVEENNGL 571 ***************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	1.1E-31	62	133	No hit	No description
Pfam	PF12041	5.7E-31	62	127	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	66.279	190	567	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-125	216	571	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MKPNHPQKPI IACPNSTSTS TSIRGGASSA TTGPALNSFT SDVTGKGKNM WDEFDDQDAG 60 VDELLAVLGY KVKSSDMVDV AQKIEHLEGV LGNDDGLSQI ASDSVHYNPS DLSSWLESMI 120 CELNPTTEAP MIDDSFMNTS SASAGAAAPS PGLTSVFVDD LQAIPGNAIY PPAKKAKHSP 180 SSSSGATSAS SSYNSKPNPN SNSVVLVDSQ ENGIRLVHTL MACAEAIQQE NLSLAENLVK 240 QAGMLAVSQA GAMRKVATYF AEALARRIYR LAPQTTQDSP AFQDLLQMHF YETCPYLKFA 300 HFTANQAILE AFAGKKKVHV IDFSMKQGMQ WPALMQALAL RPGGPPTFRL TGIGPPSGDN 360 TDHLQEVGWK LAQLADTIHV EFEYRGFVAE SLADLEPAML DLRDDEVVAV NSVFELHQLL 420 ARPGAVEKVL SAVKEMKPVI LTVVEQEANH NGLVFLERFT ESLHYYSTLF DSLESSGTGG 480 GGVEGGAISP ASNQDKIMSE VYLGKQICNV VACEGPDRVE RHETLTQWKA RLDSSGFEAV 540 HLGSNAFKQA SMLLALFAGG DGYRVEENNG LFDAGLAHQA TNHHLRLETP VNSTKSTRRW 600 RANSVPANL

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MKPNHPQKPI IACPNSTSTS TSIRGGASSA TTGPALNSFT SDVTGKGKNM WDEFDDQDAG  60
VDELLAVLGY KVKSSDMVDV AQKIEHLEGV LGNDDGLSQI ASDSVHYNPS DLSSWLESMI  120
CELNPTTEAP MIDDSFMNTS SASAGAAAPS PGLTSVFVDD LQAIPGNAIY PPAKKAKHSP  180
SSSSGATSAS SSYNSKPNPN SNSVVLVDSQ ENGIRLVHTL MACAEAIQQE NLSLAENLVK  240
QAGMLAVSQA GAMRKVATYF AEALARRIYR LAPQTTQDSP AFQDLLQMHF YETCPYLKFA  300
HFTANQAILE AFAGKKKVHV IDFSMKQGMQ WPALMQALAL RPGGPPTFRL TGIGPPSGDN  360
TDHLQEVGWK LAQLADTIHV EFEYRGFVAE SLADLEPAML DLRDDEVVAV NSVFELHQLL  420
ARPGAVEKVL SAVKEMKPVI LTVVEQEANH NGLVFLERFT ESLHYYSTLF DSLESSGTGG  480
GGVEGGAISP ASNQDKIMSE VYLGKQICNV VACEGPDRVE RHETLTQWKA RLDSSGFEAV  540
HLGSNAFKQA SMLLALFAGG DGYRVEENNG LFDAGLAHQA TNHHLRLETP VNSTKSTRRW  600
RANSVPANL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-61	199	575	2	366	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023742265.1	0.0	DELLA protein GAI1-like
Swissprot	Q8S4W7	0.0	GAI1_VITVI; DELLA protein GAI1
TrEMBL	A0A2J6JWY5	0.0	A0A2J6JWY5_LACSA; Uncharacterized protein
STRING	VIT_01s0011g05260.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	0.0	GRAS family protein