PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018083
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 259aa    MW: 30147.8 Da    PI: 10.4565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684087PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19186236256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Lsa018083 186 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 236
                59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.80E-35185244No hitNo description
PROSITE profilePS5103222.972186243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32186244IPR001471AP2/ERF domain
SMARTSM003807.6E-39186249IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-23186244IPR016177DNA-binding domain
PfamPF008471.7E-12187236IPR001471AP2/ERF domain
PRINTSPR003673.2E-11187198IPR001471AP2/ERF domain
PRINTSPR003673.2E-11209225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAAAKNSGKS KNFTEETQNF THMDFGQMGF DETREWKQVF DEASMADRHR NARPLKKIKS  60
PEHQSTSSSS SSSSKLFPFA FDGNNHQTIE SLQQYRSNFS QPLPIYPSQP QNPQMISFNP  120
QQHYQQPPMI HQNFGFPPYF SGEHSGSSQQ QLLQYWSDLS PRGRMMMMNK MRPPFQQIQP  180
IHTTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE DAAMAYDREA FKLRGENARL  240
NFPERFFKKN KNESVSGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21185245162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023734508.10.0ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J37e-44ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A2J6KDW00.0A0A2J6KDW0_LACSA; Uncharacterized protein
STRINGEOX993821e-71(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]