PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa017902 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ARF | ||||||||
Protein Properties | Length: 732aa MW: 81552.1 Da PI: 5.1661 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.4 | 3.6e-25 | 139 | 240 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ltpsd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++Lk+gD v+F +d ++ +l++ Lsa017902 139 FCKTLTPSDTSTHGGFSVPRRAAEKLfpqldfSMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLKAGDAVLFVRD--ERSQLLL 235 99*********************999*****9555544.49************************************************55..5555699 PP EEE-S CS B3 95 kvfrk 99 +v+r+ Lsa017902 236 GVRRA 240 99997 PP | |||||||
2 | Auxin_resp | 109.4 | 3.8e-36 | 265 | 348 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPra++seFv++++k++k+++ +++s+GmR m+fete+s +rr++Gt++g+sd+dp+rWp+SkW +L+ Lsa017902 265 AAHAAANRSPFTVFYNPRACPSEFVIPLAKFRKSVYgIQLSIGMRCGMMFETEESGKRRYMGTITGISDVDPLRWPGSKWHNLQ 348 79**********************************9********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-44 | 126 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-42 | 132 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.98E-23 | 138 | 239 | No hit | No description |
PROSITE profile | PS50863 | 13.239 | 139 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-23 | 139 | 240 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-23 | 139 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-31 | 265 | 348 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.328 | 623 | 707 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.9E-7 | 624 | 708 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.44E-8 | 642 | 702 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MSIIEEKTGA YSLLEDMKLL KEMQDHCGKK KSINSELWHA CAGPLVNLPQ LGSLVYYFPQ 60 GHIEQVAATT NRTATTQVPN YPNLPSQLLC QVQNTTLHTD KDTDEIYAQI SLQPLNSEKD 120 VFPIPDIGMK PSKHPSEFFC KTLTPSDTST HGGFSVPRRA AEKLFPQLDF SMQPPTQELV 180 VRDLHDNTWT FRHIYRGQPK RHLLTTGWSM FVGAKRLKAG DAVLFVRDER SQLLLGVRRA 240 NRQQTASSSS VLSADSMHIG VLAAAAHAAA NRSPFTVFYN PRACPSEFVI PLAKFRKSVY 300 GIQLSIGMRC GMMFETEESG KRRYMGTITG ISDVDPLRWP GSKWHNLQVE WDEPGCGDKR 360 ARVSPWELES PENLFIFPSL TSTLKRPFGL GFYEAQTEWD NMVAHPFIRA TEPIYGNFMN 420 PSLSNLWSEH LIKTLTKPHN VNTGCSLPVI QDAGKLQPVI IPQNVVNELP VVNQLSPLDP 480 QFDPSLSGVF PGQENNTSNN GFSDLGQEKW DPCDDVYNCL NIEGSNTGNT IVDPVSIAVL 540 DEFCNLKDDD FEDPSSYIVN NKFSPSQDVQ SQFTSSSLVD SRAYSGQELP DHSGGTSPGN 600 GEFDTGLMQT GSWKQVGPPP RVRTYTKIQK AGSVGRSIDV SGFKNYDELR SEIERMFGLE 660 GLLNDAVYSG WKLVYVDFEN DVLLVGDDPW EEFVGCVRCI RILSPCEVRK MGEEGMQLLN 720 NSTAELQALM AV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 12 | 373 | 32 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023772550.1 | 0.0 | auxin response factor 5-like | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A2J6KUI9 | 0.0 | A0A2J6KUI9_LACSA; Auxin response factor | ||||
STRING | Lus10024320 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |