PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa017804 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||||||
Protein Properties | Length: 245aa MW: 26858.1 Da PI: 5.3581 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 75 | 125 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Lsa017804 75 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 125 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-13 | 75 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.406 | 76 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-37 | 76 | 139 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-32 | 76 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 76 | 134 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-10 | 77 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-32 | 77 | 135 | No hit | No description |
PRINTS | PR00367 | 2.5E-10 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MTASLSTFTY ALMKNQSSVC AKMSIQNSTS EPDDCSSNSC NSVPSSPGST HPLPKLQNPE 60 TKTVKRSRDS STKHPVYRGV RMRSWGKWVS EIREPRKKSR IWLGTFPTPE MAARAHDVAA 120 LSIKGNSAIL NFPELVGSLP RPVSCSPRDV QAAAAKAAAM TELDFPSSSI ETASDELDEI 180 IELPVLGSSF DSLELKNDFV YTESVVDGWL YPPPWMNNGG NQEDGYVSGQ ANVISTAFES 240 LWWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 67 | 134 | 5 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023749054.1 | 0.0 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 2e-65 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2J6JHA3 | 1e-163 | A0A2J6JHA3_LACSA; Uncharacterized protein | ||||
STRING | XP_010249578.1 | 3e-79 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-64 | ERF family protein |
Publications ? help Back to Top | |||
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