PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa017702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | LBD | ||||||||
Protein Properties | Length: 179aa MW: 19932.9 Da PI: 7.2636 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.4 | 1.1e-38 | 8 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.paeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkCak+Cv+apyf p+++ +f++vh++FGa+n kll ++pe++r da+ sl+yeA r+rdPvyG+vg +++lqqq+e+l+aela+++ Lsa017702 8 PCGACKFLRRKCAKGCVFAPYFePDDRgLTDFEAVHRVFGAKNAAKLLLRTPENKRLDAVVSLCYEALSRVRDPVYGCVGRVFNLQQQVEKLQAELAYVQ 107 7*********************7666667********************************************************************998 PP DUF260 99 e 99 + Lsa017702 108 A 108 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.169 | 7 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-37 | 8 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSRNCGGPCG ACKFLRRKCA KGCVFAPYFE PDDRGLTDFE AVHRVFGAKN AAKLLLRTPE 60 NKRLDAVVSL CYEALSRVRD PVYGCVGRVF NLQQQVEKLQ AELAYVQARV SILKHHPSSC 120 QPATNRPMLS TETLISSSML SCVHFGVEQP SPVTLTPCFS RENDASIEET LFEEDNIEM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 6 | 103 | 9 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 6 | 103 | 9 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023773002.1 | 1e-132 | LOB domain-containing protein 19-like | ||||
Swissprot | O81322 | 1e-49 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A2J6KTS6 | 1e-130 | A0A2J6KTS6_LACSA; Uncharacterized protein | ||||
STRING | cassava4.1_030486m | 1e-58 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 6e-52 | LOB domain-containing protein 31 |