PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017541

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

FAR1

Protein Properties

Length: 739aa MW: 84476.9 Da PI: 6.5051

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58694622	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-17814	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.4	3.1e-20	53	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnH+l Lsa017541 53 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKPSEDGKVHRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSNVHNHDLL 146 6*************999887455667****************9***************98887676789**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-17	53	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-21	268	360	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	546	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.9E-9	549	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-5	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence Send to blast
MMKETSENGT DLSADDIGTI EEIPEDTILS RQTSVNLVPF IGQRFVSQDA AYEFYCSFAK 60 QCGFSIRRHR TRGKDGVGRG ITRRDFTCHR GGYPQIKPSE DGKVHRNRKS SRCGCQAYMR 120 IVKRADFDVP EWRITGFSNV HNHDLLKSND IHALPAYCTM SSDDKSRICM FAKAGMSVRQ 180 MLRLLELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDSDAI DLLKMCKDKK DKDPNFKYNF 240 KIDSNNHLDH IAWTYSSSTQ SFDSFGDVVV FDTTHRLDSY DMLLGIFLGV DSYGTNCFFG 300 CVLLRDENIQ SFRWALKTFL SFMNGKVPET ILTDQNMWLK EAIAIETPRT KHAFCIWQII 360 SKFSDWFSVL LGSRYDQWKA EFHGIYNLHL VDEFELRWRE MVDRYGLHGN KHIVSLYALR 420 TFWALPFLRC YFFAGMTNTF QPELINAFIQ RFLSAQSVLE NFIEQVAVVM EAKDQATLKQ 480 KMIRRNQKIS LKTGSPIESH AATVLTPYAF SKLQEQLVLA PQYASLLVDE SYFIVRHHTE 540 INGGSKVIWI PDDEFISCSC HDFEFSGILC RHVLRVLSTN NCFNVPYQYL PIRWRSQIGT 600 GNDQNAQNQM LQLQSVVSSL VSEAVETDER LNFVSGEINM VLTRVKEFPG ACNDMAYDDD 660 DDDSTPDSLI LPEVEDSDNS IVHGFTRHSH EGGLNLGKLK ERRSNSKRRL ACCGQFGQDA 720 NDCPLMGSGD MNGDGMGFL

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence Send to blast

MMKETSENGT DLSADDIGTI EEIPEDTILS RQTSVNLVPF IGQRFVSQDA AYEFYCSFAK  60
QCGFSIRRHR TRGKDGVGRG ITRRDFTCHR GGYPQIKPSE DGKVHRNRKS SRCGCQAYMR  120
IVKRADFDVP EWRITGFSNV HNHDLLKSND IHALPAYCTM SSDDKSRICM FAKAGMSVRQ  180
MLRLLELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDSDAI DLLKMCKDKK DKDPNFKYNF  240
KIDSNNHLDH IAWTYSSSTQ SFDSFGDVVV FDTTHRLDSY DMLLGIFLGV DSYGTNCFFG  300
CVLLRDENIQ SFRWALKTFL SFMNGKVPET ILTDQNMWLK EAIAIETPRT KHAFCIWQII  360
SKFSDWFSVL LGSRYDQWKA EFHGIYNLHL VDEFELRWRE MVDRYGLHGN KHIVSLYALR  420
TFWALPFLRC YFFAGMTNTF QPELINAFIQ RFLSAQSVLE NFIEQVAVVM EAKDQATLKQ  480
KMIRRNQKIS LKTGSPIESH AATVLTPYAF SKLQEQLVLA PQYASLLVDE SYFIVRHHTE  540
INGGSKVIWI PDDEFISCSC HDFEFSGILC RHVLRVLSTN NCFNVPYQYL PIRWRSQIGT  600
GNDQNAQNQM LQLQSVVSSL VSEAVETDER LNFVSGEINM VLTRVKEFPG ACNDMAYDDD  660
DDDSTPDSLI LPEVEDSDNS IVHGFTRHSH EGGLNLGKLK ERRSNSKRRL ACCGQFGQDA  720
NDCPLMGSGD MNGDGMGFL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023728912.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A251SP38	0.0	A0A251SP38_HELAN; Putative FAR1 DNA binding domain, Zinc finger, SWIM-type, MULE transposase domain, FHY3/FAR1 family
STRING	VIT_07s0005g01120.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]