PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017369

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

FAR1

Protein Properties

Length: 767aa MW: 87386.2 Da PI: 7.8508

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58695856	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.4	7.3e-21	42	116	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF++r+ + ++s+ +g++++r++vCskeg++++ +rtgC a ++v+k ++gkw+++++++eHnH++ Lsa017369 42 EFYNTYATQTGFKIRIGQLYRSRVDGSVISRRYVCSKEGFQTT--------------SRTGCPAFIRVQKGDSGKWVLANIKKEHNHDM 116 6*************************************976..............589*************************97 PP
2	FAR1	69	1.2e-21	203	278	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfYn+YA ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++ +++g+w+v++l++eHnHel Lsa017369 203 KFYNNYAANLGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQHDDSGRWVVDRLSKEHNHELD 278 6************************************9998..............4899*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-17	42	116	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.7E-17	203	278	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.8E-28	376	469	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.348	651	689	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-8	652	686	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-8	664	691	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MNLRSKLGAT VFKTNGQRED EGESKVEPYV GLEFDTPEAA QEFYNTYATQ TGFKIRIGQL 60 YRSRVDGSVI SRRYVCSKEG FQTTSRTGCP AFIRVQKGDS GKWVLANIKK EHNHDMDVSG 120 DVDGGDVSGG EVQTPVTQKK APPPPKPTAT PRSGIRSADG DGSSGILDLK RLKRGEMEPE 180 SESQPLGDPF KGLEFNSANE AYKFYNNYAA NLGFKVRIGQ LFRSKNDGSI TSRRFVCSKE 240 GHQHPSRVGC GAFMRIQHDD SGRWVVDRLS KEHNHELDSP ETTTRRKNSK SSKEELAAGL 300 DNLDLLETNG GLSLVERDRG SGIGSRWYNV LLEYFQSRQA EDTGFFYALE VDNSRLMSVF 360 WADGRSRFSC TQFGDVVIFD TSYRSGSYSV PFASFYGINH HRQPVLLACA LISDESEDSF 420 TWVFKTWVRA MSGRRPVSII ADQDKPIQNA ISTVFPATHH RFSAWQILQK ERENLGALWS 480 IDEFKFEYEA CISQTQTASE FDSAWNLLTT KYNLKDNVWL KEMYITRKSW VPLYLKSTFF 540 AGIPVNGSTK PYFDPFLTPQ VPLNEFLIRY EKAIEHHREE ERKEDFSSFN SQIVLHTKDP 600 LEEQCRRLYT ITVFKVFQKE LLESYTYVGI KINIEGAISR YLVQRCGNGD ERNTVAFNGS 660 NLNITCSCRM FEFEGVLCRH ALKVFQIMNI REIPSRYILH RWTKNAKYGI LRDVDSGGGG 720 QDFKALMVWS LREEAHSYID AGAASIERYK LAFEILQEGR RNLCWQN

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MNLRSKLGAT VFKTNGQRED EGESKVEPYV GLEFDTPEAA QEFYNTYATQ TGFKIRIGQL  60
YRSRVDGSVI SRRYVCSKEG FQTTSRTGCP AFIRVQKGDS GKWVLANIKK EHNHDMDVSG  120
DVDGGDVSGG EVQTPVTQKK APPPPKPTAT PRSGIRSADG DGSSGILDLK RLKRGEMEPE  180
SESQPLGDPF KGLEFNSANE AYKFYNNYAA NLGFKVRIGQ LFRSKNDGSI TSRRFVCSKE  240
GHQHPSRVGC GAFMRIQHDD SGRWVVDRLS KEHNHELDSP ETTTRRKNSK SSKEELAAGL  300
DNLDLLETNG GLSLVERDRG SGIGSRWYNV LLEYFQSRQA EDTGFFYALE VDNSRLMSVF  360
WADGRSRFSC TQFGDVVIFD TSYRSGSYSV PFASFYGINH HRQPVLLACA LISDESEDSF  420
TWVFKTWVRA MSGRRPVSII ADQDKPIQNA ISTVFPATHH RFSAWQILQK ERENLGALWS  480
IDEFKFEYEA CISQTQTASE FDSAWNLLTT KYNLKDNVWL KEMYITRKSW VPLYLKSTFF  540
AGIPVNGSTK PYFDPFLTPQ VPLNEFLIRY EKAIEHHREE ERKEDFSSFN SQIVLHTKDP  600
LEEQCRRLYT ITVFKVFQKE LLESYTYVGI KINIEGAISR YLVQRCGNGD ERNTVAFNGS  660
NLNITCSCRM FEFEGVLCRH ALKVFQIMNI REIPSRYILH RWTKNAKYGI LRDVDSGGGG  720
QDFKALMVWS LREEAHSYID AGAASIERYK LAFEILQEGR RNLCWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023739228.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A251STX3	0.0	A0A251STX3_HELAN; Putative FAR1-related sequence 7
STRING	Migut.N00138.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]