PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017159
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 287aa    MW: 31939.2 Da    PI: 7.5546
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58696569PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-16137185355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++GVr++  +g+WvAeIr p++   r+r++lg+f  ae+Aa a++ a+  l+g
  Lsa017159 137 FRGVRQRQ-WGKWVAEIRLPRN---RTRVWLGTFEKAEDAAFAYDTAAYILRG 185
                8****999.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-27135195No hitNo description
PROSITE profilePS5103221.575136193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-29136194IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-21136193IPR016177DNA-binding domain
SMARTSM003801.8E-32136199IPR001471AP2/ERF domain
PfamPF008474.3E-9137184IPR001471AP2/ERF domain
PRINTSPR003671.5E-9137148IPR001471AP2/ERF domain
PRINTSPR003671.5E-9159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MENHNLFPQV SSYFHQRLEG SQTFSDSNLS NTQYNPATHG ASDGSNCSIL SFLTPDFGGF  60
IEATIPSSSL FTNTSRFIQN LEVVANLQPT DWLKISQKST NDHYWLNTRA QPMKYTKRHI  120
LNTAFESTPI CSPRKLFRGV RQRQWGKWVA EIRLPRNRTR VWLGTFEKAE DAAFAYDTAA  180
YILRGDCAFL NFPNLKKQLK ANSINGDTAT LLKAKLQAMS REMVDTKGND DLAPPLPEAG  240
LPASVVVVGG PEVKVVVPPD AGEGIQLSRM PSLDMDSIWD ALLVSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20135193160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20135203468ATERF1
3gcc_A3e-20135203468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023747768.10.0ethylene-responsive transcription factor ERF062-like
SwissprotQ9SVQ08e-52ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A2J6JK430.0A0A2J6JK43_LACSA; Uncharacterized protein
STRINGcassava4.1_023072m5e-62(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-43ERF family protein