PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017090

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 304aa MW: 34008.7 Da PI: 6.6516

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58678647	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-24192	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3.1e-10	175	213	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 kr +r NR +A+rsR RK+++i eLe+ v +L+a+ + Lsa017090 175 KRIKRILANRQSAQRSRVRKLQYISELERSVNSLQAQVS 213 899********************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-11	171	235	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.105	173	225	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.73E-10	175	229	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-9	175	225	No hit	No description
Pfam	PF00170	1.8E-8	175	215	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.23E-21	176	226	No hit	No description
PROSITE pattern	PS00036	0	178	193	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MAHPASKSAT KLVGKLPPPP KATVSEHLPP PTTAAATTQV DPSWVDDFLD FSSTKRGSHR 60 RSVSDSAAFL EIPMMGEDNC RRSSAPGSRS GNGGGTATEF DRFDEEQFMS MFIDDENGTG 120 PTVSCSNPSS PSDHNSMNDQ HQIEEEESSC KSDTQFNPHA RTIMDNSNDK IFDPKRIKRI 180 LANRQSAQRS RVRKLQYISE LERSVNSLQA QVSLLSPREA YLDHQRLVLN MDNSVLKQRI 240 AALSQDKIFK DAHQEALKGE IERLKQMYYQ QNMNKKMENG SNATHHHDSP ISDHANAQEQ 300 LMIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023762877.1	0.0	basic leucine zipper 61-like
Swissprot	Q9M2K4	2e-87	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A2J6LFU2	0.0	A0A2J6LFU2_LACSA; Uncharacterized protein
STRING	XP_006446743.1	1e-108	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-89	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]