PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016968
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 348aa    MW: 38704.6 Da    PI: 6.9201
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683876PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-31984PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.4e-1171113547
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++Lk+
  Lsa016968  71 KILRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEHELKQ 113
                6679*************************99999998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-667135IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.24369113IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.6E-969114No hitNo description
PfamPF001706.1E-871113IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.07E-772114No hitNo description
PROSITE patternPS0003607489IPR004827Basic-leucine zipper domain
PfamPF141447.3E-32153226IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVVSGGGSGG GGGGIGKGHF ENWGESGIAD NSQQTDTSTD IDTDDKNQFN SLQHGAQDSM  60
EGSMGKIGDQ KILRRLAQNR EAARKSRLRK KAYVQQLENS RLKLTQLEHE LKQARQQGML  120
IANGDQSHLL GSNGALAFDM DYARWLEDHQ RLINDVRSAF NTHANDNELR VLVDAIMSHY  180
DEIFRLKSIA AKSDVFHLLS GMWKSPAERC FMWIGGFRSS ELLKILGSHL EPLTDQQLMG  240
ICNLQQSSQQ AEDALSQGME AWQQSLVDTL SSTSGGSVDY MGQMAMAMGK LGTLENFLHQ  300
ADLLRQQTLQ QLHRILTTRQ AARALLVIND YMSRLRALSS LWLARPKD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756080.10.0transcription factor TGA2.3-like
SwissprotO241601e-163TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A2J6LVA60.0A0A2J6LVA6_LACSA; Uncharacterized protein
STRINGEOY021120.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-131bZIP family protein