PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa016951 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | WRKY | ||||||||||||
Protein Properties | Length: 221aa MW: 25820.4 Da PI: 7.9163 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.5 | 1.2e-32 | 147 | 205 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+ Lsa016951 147 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHS 205 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-34 | 132 | 205 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-28 | 139 | 205 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.608 | 142 | 204 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-38 | 147 | 206 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 148 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEGSERGLAN FDLQVSSFQN PIHDHIGFAH FQDHHHNHDP HQTQVLRFLP PTLSLPQLSQ 60 PPHHTTTTTS AEAADFHREA PSVHRDSWHK EQVGSLDPKS VNEEKCADDN TSWWRSSSNP 120 EKGRTKMRRK LREPRFCFQT RSDVDVLDDG YKWRKYGQKV VKNSLHPRSY YRCTHSNCRV 180 KKRVERLSED CRMVITTYEG RHNHSPCDDS NSSEHECFTS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-26 | 138 | 204 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-26 | 138 | 204 | 8 | 74 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023772780.1 | 1e-166 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 2e-63 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | A0A2J6KU46 | 1e-165 | A0A2J6KU46_LACSA; Uncharacterized protein | ||||
STRING | EOX96509 | 1e-92 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 1e-65 | WRKY family protein |
Publications ? help Back to Top | |||
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