PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa016716 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GATA | ||||||||
Protein Properties | Length: 241aa MW: 26441.8 Da PI: 8.2994 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53 | 4.6e-17 | 164 | 198 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l Lsa016716 164 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 198 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.229 | 158 | 194 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.2E-14 | 158 | 212 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.62E-14 | 159 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.0E-14 | 159 | 195 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.17E-10 | 163 | 210 | No hit | No description |
Pfam | PF00320 | 6.7E-15 | 164 | 198 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 164 | 189 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDICQNIPVS GGLPTNYPPE QHLICSLDEL LSGHSMEEDD VNMEWLSIFV EDCLSSSGSC 60 MPPAAKPQST TSTAEGTNTS AEPQPKVNET YSISTHKILV PCKARSKRKR SQTCWSQQYL 120 NSLQPPCWLA ESELMIFPKK CTSPNSRGSG QEEGSSGQGQ GRKCTHCLSQ RTPQWRAGPL 180 GPKTLCNACG VRYKSGRLLP EYRPAKSPTF VSDKHSNSHR KVLEMRMSFL PSPSTNSSSS 240 S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 111 | ARSKRKRSQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023756790.1 | 1e-178 | GATA transcription factor 9-like | ||||
TrEMBL | A0A2J6LTF5 | 1e-177 | A0A2J6LTF5_LACSA; Uncharacterized protein | ||||
STRING | XP_010257696.1 | 3e-70 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 2e-43 | GATA transcription factor 9 |