PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016620
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 207aa    MW: 24066.6 Da    PI: 6.716
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678813PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.86.2e-1585143563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                +++rr+++NRe+ArrsR RK+++++eL + v  L +eN+ L ++l++ +++ +++ +e+
  Lsa016620  85 RKQRRMISNRESARRSRMRKQKQLDELCTQVMRLRNENHGLMDKLNRFSETHEQVIQEN 143
                689************************************************99988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-1481145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.84183146IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.3E-1184138No hitNo description
SuperFamilySSF579591.37E-1185135No hitNo description
PfamPF001701.9E-1285143IPR004827Basic-leucine zipper domain
CDDcd147021.64E-1786136No hitNo description
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEGNYYLAPE YEDHSCNFST NFTSLQNDNM SSSHQFLTNL PYCHQTTHPQ VPIVDFYPQS  60
SSLSYNNSST SDEAEDNQMS IINERKQRRM ISNRESARRS RMRKQKQLDE LCTQVMRLRN  120
ENHGLMDKLN RFSETHEQVI QENNRLKKET TELRQLLSEA QLARTYTTLK DLDDDQEVVL  180
VPSCTTAHLR AQSSKNSTAK NSSNLLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197104RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748269.11e-152basic leucine zipper 43-like
SwissprotQ9FMC25e-40BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2J6JJ041e-126A0A2J6JJ04_LACSA; Uncharacterized protein
STRINGVIT_01s0010g00930.t014e-53(Vitis vinifera)
STRINGcassava4.1_022183m4e-53(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.13e-38basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]