PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016592
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 161aa    MW: 18679.7 Da    PI: 7.6805
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682648PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.84.7e-132784562
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
               ++ +r+q+NRe+ArrsR RK++ ++ L+  +  L++ N++   +++  +++  + ++e
  Lsa016592 27 RKRKRMQSNRESARRSRMRKQKHLDDLTAQINHLKNNNSQIVTTIKVTTQQFLQIEAE 84
               5789***********************************9999999888887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-172387IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.2312588IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-1026102No hitNo description
PfamPF001701.1E-92775IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.22E-122779No hitNo description
CDDcd147022.90E-192878No hitNo description
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDSSSGNSTR FTQIQNSGSD EVLIDPRKRK RMQSNRESAR RSRMRKQKHL DDLTAQINHL  60
KNNNSQIVTT IKVTTQQFLQ IEAENIVLRA QMGELSQRLD SLNEMINSMN NNSNYFTENH  120
CTNGTSGVFE FEQPDFFNNP WNMMHLNQQP IMASANDTFQ Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12647RKRKRMQSNRESARRSRMRKQK
23946RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733139.11e-117bZIP transcription factor 11-like
RefseqXP_023750591.11e-117bZIP transcription factor 11-like
SwissprotC0Z2L52e-43BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A2J6M7I51e-116A0A2J6M7I5_LACSA; Uncharacterized protein
STRINGPOPTR_0005s25290.13e-53(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-33basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]