PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa015602 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 25898.8 Da PI: 9.3576 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.7 | 4.4e-11 | 102 | 145 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 + +GV++ k + +W A I++ +k+++lg+ + eeAa+++++a+ Lsa015602 102 CVMRGVYY-K-NMKWQAAIKVE-----KKQIHLGTVSSQEEAARLYDRAAF 145 568***96.5.7*********6.....6********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.65 | 86 | 158 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-5 | 102 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-8 | 104 | 148 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-7 | 105 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-5 | 105 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVSIRRQRLI KLYGRNPFLD FLSSYGNGKS PGCWVQNTRS AGMHLSPSVD IDHHDEKNTK 60 FEEPESSIVN GSSSSYKQPV SHPEFKRRKR HRRKHFENQE ACVMRGVYYK NMKWQAAIKV 120 EKKQIHLGTV SSQEEAARLY DRAAFMCGRE PNFELTVEEK DELSQLSWDD FLAMTRSAIN 180 SKKSQRRVSS RMKFENQRHN NSDSEAEAIE GGNGFSGSDD ADTSVA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023759213.1 | 1e-171 | ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
TrEMBL | A0A2J6LNS4 | 1e-170 | A0A2J6LNS4_LACSA; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P06510_001 | 7e-61 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 3e-46 | ERF family protein |