PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015474
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 329aa    MW: 37545.5 Da    PI: 6.2012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688293PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-26282PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12188213126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                y   +C+++ +tG+C yGd+CkF+H+
  Lsa015474 188 YQPDICKDYKETGYCGYGDSCKFMHD 213
                67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-9186218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878187215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7187214IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12188218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.3E-13255316IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.8E-13268312No hitNo description
PfamPF139203.2E-8268310No hitNo description
SMARTSM001842.8E-4269306IPR001841Zinc finger, RING-type
CDDcd001629.66E-6269310No hitNo description
PROSITE profilePS5008910.321269307IPR001841Zinc finger, RING-type
PROSITE patternPS005180284293IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAEKPEEQPN TEQVCNFFRK PSKKKNIRKR AQDDEMDEEE EPSVVINKKK AVAADNKLYF  60
ATGSSKRSAT SEQQQEAEAD NTKATIFQFD SSKEIQVQND SRATATLETE TDFSRDARAI  120
RERVLKQADQ ALKGKGNGDE KLYKGIHGYT DYKAGFRREQ TVASEKAGGS HGPLRASAHI  180
RVSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQMERDWDEA EKARKRKLAL  240
KGDDDDDDDN DDDDEHDDDE DEDGLPFACF ICRQPFVDPV MTKCKHYFCE HCALKHHAKK  300
KKCYVCNQPT LGIFNTAHEI RKRMAAGGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-6613241317RING finger protein 113A
5z58_M5e-6613241317RING finger protein 113A
6ff4_t5e-6613241317RING finger protein 113A
6ff7_t5e-6613241317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746430.10.0zinc finger CCCH domain-containing protein 1-like
RefseqXP_023746431.10.0zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-158C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2J6JN590.0A0A2J6JN59_LACSA; Uncharacterized protein
STRINGXP_010265576.11e-173(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-141C3H family protein