PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015158
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 197aa    MW: 22918.4 Da    PI: 5.8228
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58674192PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.52.3e-1684138559
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ +++ +k+
  Lsa015158  84 RKQRRMISNRESARRSRMRKQKHLDELWSQVMWLRNENHQLIDKLNSFTETHEKV 138
                689**********************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-1580144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.81882145IPR004827Basic-leucine zipper domain
PfamPF001703.1E-1484138IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-1384134No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-1384156No hitNo description
CDDcd147021.02E-1985135No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQASEPTDFH YLVPTNPNPN TPHLAMNLSN SPTIPFDVNT MTNPFYHLHM NPRVQDLNMQ  60
SMYFGSNSTS DEADEQQLSL INERKQRRMI SNRESARRSR MRKQKHLDEL WSQVMWLRNE  120
NHQLIDKLNS FTETHEKVVQ ENTQLKDEVS GLRQMVTDMQ LNGTYSALRD LDDIHCNDAY  180
LRPESSNQSG SSSSDFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728333.11e-146basic leucine zipper 43-like
SwissprotQ9FMC23e-46BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2J6KSM51e-145A0A2J6KSM5_LACSA; Uncharacterized protein
STRINGcassava4.1_021296m2e-78(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.16e-51basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]