PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa014713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 25889.9 Da PI: 10.1018 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.2 | 3.2e-21 | 29 | 80 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g+ Lsa014713 29 PHFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 80 689*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-14 | 29 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-19 | 29 | 89 | No hit | No description |
SMART | SM00380 | 1.2E-37 | 30 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 30 | 88 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-32 | 30 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.894 | 30 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MAPKERSTGA GKPNAHPAGL GVSVGAKEPH FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF 60 DTAEEAARAY DAAAREFRGA KAKTNFPTHD DLGLLKLQTC PNQRSPSQTS TVESSSRDPE 120 PVVPLLDLNL SYGSPPPFVV QFPYNHHHNH NQPRFSTVPG AGFYSPPANQ MFYFDGGSKP 180 SARHITNCDR SSIIFRQSAS VAKSDDSASS SVVDLKPSPP TRRVGVTIDL NFPPPVES |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-23 | 21 | 93 | 5 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023746838.1 | 1e-143 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2J6JMB5 | 1e-142 | A0A2J6JMB5_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15210.1 | 3e-24 | ethylene responsive element binding factor 4 |