PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa014380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28567.9 Da PI: 7.9169 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8.2e-21 | 98 | 149 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +grW+AeIrdp g+rkr++lg+f+taeeAa +++a+ l+g+ Lsa014380 98 KKYRGVRRRP-WGRWAAEIRDP---GRRKRVWLGTFDTAEEAATVYDNAAVTLKGH 149 59********.**********8...556**********************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 3.0E-72 | 7 | 253 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 4.55E-32 | 98 | 156 | No hit | No description |
Pfam | PF00847 | 1.4E-13 | 99 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-37 | 99 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.526 | 99 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-31 | 99 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 99 | 157 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.2E-11 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEVKSPSSVR SAVKFSEHVV RTNKFVQEES LAMKQRVVRI RLVDPYATDS SDDDDEGVMK 60 RVKKHVFEIN VNPPSSKFKR DRSRNRRHVR RSTGSMEKKY RGVRRRPWGR WAAEIRDPGR 120 RKRVWLGTFD TAEEAATVYD NAAVTLKGHN AVTNFPTGSV TETVIVQGKK PTVTTTSGGD 180 DDGQVHDGVL SPTSVLPFDD ELSPFAGLRY SDVDAFGFDI DLSINLPDFT VPAKYHTEEF 240 GDFDIDDFLV DVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-22 | 91 | 156 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 106 | RRSTGSMEKKYRGVRRRP |
2 | 103 | 122 | RRRPWGRWAAEIRDPGRRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023728849.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 4e-64 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A2J6KRK7 | 0.0 | A0A2J6KRK7_LACSA; Uncharacterized protein | ||||
STRING | XP_008240070.1 | 2e-67 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-37 | cytokinin response factor 4 |