PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014160
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 335aa    MW: 39190.9 Da    PI: 10.1388
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686363PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-14721PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-092653126
               --S---SGGGGTS..--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHg 26
               +k ++C  ++++   tC++G+ C+F H+
  Lsa014160 26 WKVAICGEYMKSRlkTCSRGSACNFLHC 53
               899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR018485.8E-7731IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010311.3572555IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-72653IPR000571Zinc finger, CCCH-type
PRINTSPR018485.8E-74557IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAYNSVHGRY FASKQVKCEF VSLTRWKVAI CGEYMKSRLK TCSRGSACNF LHCFTNPGGD  60
YEWADCDKPP PRFWVTKMVA LFGYSEDDTW HQPTPRDQHR IFTSDRVSYR EKRHRSIEKN  120
QHNGNSSRKH HDENHVRKSR KHERDKNYEH ENSDSDGDRL RRHHEGSQTH SRHSRSKESN  180
YRKSKRRTHG SSSSSSSCDE DFYTKKRHLN TKSRSRRAKN VSESSNDEES DDAELKRRKE  240
RKTNCQRSRR RGRDGGSCEI DGESGKVERR RNGRSRSREG GGGCLSEKIE MGDRWEPEGS  300
PDELKNSEGD GKSSHGENRR SLDCDDKMRD KRKRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184188KRRTH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736056.10.0zinc finger CCCH domain-containing protein 5-like
TrEMBLA0A2J6KAM00.0A0A2J6KAM0_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.15e-49C3H family protein